Glyma09g01950 - SoyBase

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Report for Sequence Feature Glyma09g01950

Feature Type:	gene_model
Chromosome:	Gm09
Start:	1277887
stop:	1281350
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g01950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17170	AT	Annotation by Michelle Graham. TAIR10: RAB GTPase homolog B1C \| chr4:9644908-9646220 REVERSE LENGTH=211	SoyBase	E_val: 3.00E-154	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0048235	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen sperm cell differentiation	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0098	KOG	GTPase Rab2, small G protein superfamily	JGI		ISS
PTHR24073	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24073:SF246	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_I1L068	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Papilionoideae RepID=I1L068_SOYBN	SoyBase	E_val: 9.00E-156	ISS
UniRef100_Q39824	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Guanine nucleotide regulatory protein n=1 Tax=Glycine max RepID=Q39824_SOYBN	SoyBase	E_val: 1.00E-154	ISS

Expression Patterns of Glyma09g01950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g01950 not represented in the dataset	Glyma09g01950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g01950

Paralog	Evidence	Comments
Glyma15g12880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g01950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g016700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g01950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g01950

Limit To All Plant Sequences

>Glyma09g01950.2   sequence type=transcript   gene model=Glyma09g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTTCTAATGAGTTACATATTGAAAAAATAAAATAAAAATATGATAAAATTGTGAATGCTTTTTATTCTGTGGTTGTGGTAGTACCTGCTTCTAAACACTCCTCTGCTTCACATGATTTAACTATACTGGACTCTTTATTCAAGCTGTGATTACAATCAAGGTTGTCAAACTCTCAAGTTAACTAGTATACTCATAGAGTGTATGGTTCTAGGAGTTGGAAAGTCTTGTCTTCTACTTCAATTCACGGACAAGCGCTTTCAGCCCGTCCATGACTTGACCATCGGTGTTGAATTTGGTGCCAGGATGATCACAATTGATAACAAGCCAATCAAGTTGCAAATATGGGATACGGCTGGTCAAGAATCATTCAGATCTATTACAAGGTCTTATTACAGAGGGGCTGCAGGTGCATTGCTTGTTTATGATATAACCAGGAGGGAGACATTTAATCATTTGGCTAGCTGGTTGGAAGATGCAAGACAGCATGCAAATGCAAATATGACTATTATGCTGATTGGCAACAAGTGTGATCTTGCTCATAGAAGGGCTGTAAGCACAGAGGAAGGCGAGCAATTTGCAAAGGAGCATGGATTGATCTTCATGGAGGCCTCAGCAAAAACTGCTCAGAATGTTGAAGAGGCATTCATAAAAACAGCTGCAACCATATACAAAAAGATTCAAGATGGAGTTTTTGATGTATCAAATGAGTCTTATGGAATAAAAGTAGGATATGGTGGAATTCCTGGACCTTCTGGAGGTAGGGATGGCCCTTCTGCTTCGGCTGGAGGTTGCTGCAGTTGAAGAGAACCTATCAGAACCTATCTGCATCAATGTAGTCCTTTATGTCTTCTCTTCTTTTATTTTGGGTTTGGATATGAAGATATATATGTTCTACGTCCATTCATAAAATCAGATAATTGTATAATGTTTTCTTTTTAATCTTGACTTTGTTTCTTTGACGTGAACTGATAATTTGTCTATATTTGTGTGCATAGTTAATTGATCTGTTGTTTCATTTTTATTATAGTGTGTTACTGTGTTTAGTTAATTGATCTGTTCTTTCATTCTTCTTATTTATAGTGTGTTTGGTTCTCTGCTTTGATAACGCACGTTCATATTAATTTCGTCCAATACGCATAAGCGAGTAAT

Coding sequences of Glyma09g01950

Limit To All Plant Sequences

>Glyma09g01950.1   sequence type=CDS   gene model=Glyma09g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTACGCTTATCTCTTCAAATACATCATCATCGGTGACACCGGAGTTGGAAAGTCTTGTCTTCTACTTCAATTCACGGACAAGCGCTTTCAGCCCGTCCATGACTTGACCATCGGTGTTGAATTTGGTGCCAGGATGATCACAATTGATAACAAGCCAATCAAGTTGCAAATATGGGATACGGCTGGTCAAGAATCATTCAGATCTATTACAAGGTCTTATTACAGAGGGGCTGCAGGTGCATTGCTTGTTTATGATATAACCAGGAGGGAGACATTTAATCATTTGGCTAGCTGGTTGGAAGATGCAAGACAGCATGCAAATGCAAATATGACTATTATGCTGATTGGCAACAAGTGTGATCTTGCTCATAGAAGGGCTGTAAGCACAGAGGAAGGCGAGCAATTTGCAAAGGAGCATGGATTGATCTTCATGGAGGCCTCAGCAAAAACTGCTCAGAATGTTGAAGAGGCATTCATAAAAACAGCTGCAACCATATACAAAAAGATTCAAGATGGAGTTTTTGATGTATCAAATGAGTCTTATGGAATAAAAGTAGGATATGGTGGAATTCCTGGACCTTCTGGAGGTAGGGATGGCCCTTCTGCTTCGGCTGGAGGTTGCTGCAGTTGA

>Glyma09g01950.2   sequence type=CDS   gene model=Glyma09g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTAGGAGTTGGAAAGTCTTGTCTTCTACTTCAATTCACGGACAAGCGCTTTCAGCCCGTCCATGACTTGACCATCGGTGTTGAATTTGGTGCCAGGATGATCACAATTGATAACAAGCCAATCAAGTTGCAAATATGGGATACGGCTGGTCAAGAATCATTCAGATCTATTACAAGGTCTTATTACAGAGGGGCTGCAGGTGCATTGCTTGTTTATGATATAACCAGGAGGGAGACATTTAATCATTTGGCTAGCTGGTTGGAAGATGCAAGACAGCATGCAAATGCAAATATGACTATTATGCTGATTGGCAACAAGTGTGATCTTGCTCATAGAAGGGCTGTAAGCACAGAGGAAGGCGAGCAATTTGCAAAGGAGCATGGATTGATCTTCATGGAGGCCTCAGCAAAAACTGCTCAGAATGTTGAAGAGGCATTCATAAAAACAGCTGCAACCATATACAAAAAGATTCAAGATGGAGTTTTTGATGTATCAAATGAGTCTTATGGAATAAAAGTAGGATATGGTGGAATTCCTGGACCTTCTGGAGGTAGGGATGGCCCTTCTGCTTCGGCTGGAGGTTGCTGCAGTTGA

Predicted protein sequences of Glyma09g01950

Limit To All Plant Sequences

>Glyma09g01950.1   sequence type=predicted peptide   gene model=Glyma09g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS*

>Glyma09g01950.2   sequence type=predicted peptide   gene model=Glyma09g01950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSASAGGCCS*

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