SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G05030 | AT | Annotation by Michelle Graham. TAIR10: Copper transport protein family | chr4:2576790-2577974 REVERSE LENGTH=110 | SoyBase | E_val: 1.00E-21 | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| PTHR22814 | Panther | COPPER TRANSPORT PROTEIN ATOX1-RELATED | JGI | ISS | |
| PTHR22814:SF5 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF00403 | PFAM | Heavy-metal-associated domain | JGI | ISS | |
| UniRef100_A2Q5G7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heavy metal transport/detoxification protein n=1 Tax=Medicago truncatula RepID=A2Q5G7_MEDTR | SoyBase | E_val: 7.00E-34 | ISS |
| UniRef100_I1L066 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L066_SOYBN | SoyBase | E_val: 2.00E-45 | ISS |
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Glyma09g01920 not represented in the dataset |
Glyma09g01920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g12865 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g016400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g01920.1 sequence type=CDS gene model=Glyma09g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAAAAGATTGTGATGAAGGTGCACATGAATTGCCAAAAGTGCCGCACGAAGGCACTCAAGGTTGTTGCTGCAGCAAGTGGTGTGAATTCTGTGGGGTTAGAGGGAGAAGAGAAAGACAAGTTGGTGGTGATTGGAGATGGCGTTGATGTTGTTAAGTTGACAAATTCTTTGAGGGAAAAAGTTGGACATACTGATATCATAAGCTTAGCAGAGGTCAAGGCAAGTTAG
>Glyma09g01920.1 sequence type=predicted peptide gene model=Glyma09g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQKIVMKVHMNCQKCRTKALKVVAAASGVNSVGLEGEEKDKLVVIGDGVDVVKLTNSLREKVGHTDIISLAEVKAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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