Glyma09g01870 - SoyBase

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Report for Sequence Feature Glyma09g01870

Feature Type:	gene_model
Chromosome:	Gm09
Start:	1218306
stop:	1225017
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g01870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55990	AT	Annotation by Michelle Graham. TAIR10: calcineurin B-like protein 2 \| chr5:22672189-22673579 FORWARD LENGTH=226	SoyBase	E_val: 1.00E-126	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010118	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal movement	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0019722	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0055075	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion homeostasis	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0034	KOG	Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein	JGI		ISS
PTHR23056	Panther	CALCINEURIN B	JGI		ISS
PTHR23056:SF3	Panther	CALCINEURIN B	JGI		ISS
UniRef100_B0I559	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcineurin B-like protein n=1 Tax=Phaseolus vulgaris RepID=B0I559_PHAVU	SoyBase	E_val: 2.00E-138	ISS
UniRef100_I1L060	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L060_SOYBN	SoyBase	E_val: 9.00E-163	ISS

Expression Patterns of Glyma09g01870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g01870 not represented in the dataset	Glyma09g01870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g01870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g016000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g01870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g01870

Limit To All Plant Sequences

>Glyma09g01870.4   sequence type=transcript   gene model=Glyma09g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCAATTACTCACCTGTTTACCTAGATATTTATTAAGTAAAACCAATTTTTATAATAAATAAATAATAGTTTTTGATGAAAAAAAATTATAAATACACACAAACACAATTTCTCCCTCCTTTTTTATTTTCATACTAAATTACATAGACAAAAATGTCCAATCCTTCTTCTTTCTCTGGTTTTTCTGAAAGGTAAACCCCACTACTCCATTTTTACCCTGTTCTGCACTGCTTCGTCTCTATCACTTAGCAAGTTGTTTTCTTTTTATTTTGTTATTTAATTCATCTGGAGATTTTAATTTAATTTTGAAAGCACTTAACTTTGTGTGTTGTTTAATTAGTATCAAAGAAGATGAATCTGTTCAATTTTGCATTGTCCGTGTCACTCTCATGTTTTTTTAAATGCTTCTCAAAAGTGCCATTTCGAAATCTCAATGGGAGTTCAATTCAGACCATGTTTAGTGTCACAAAGTTGCTTCCTTTCTTTCTTGCCTTGGTTGTTGCATGTAAGGGAGTGTGAATTGTGTTTTGTGTTGTTGGAACTGTGATTTTCCGTTTATCCGGTTTTGTGAATCTTTCTGCTTTTATTTGTTGCGGAATATTTACGATTACCTCTTAGTTTATAGTCTAGTTTATTGGTAGAACGAGATCATGTATGTGTTACTTTTTTATTTGTTGCTGAATAATTATGACTAGCTCTTAGTTTATAGTGTAGTTTATTGGTAGAATGAGTTCATGTGTGTGTTTCTTCAAGAACATGTTTCTGCTTTCCGTGGTTGTAGTATATTTGTTTTTAAGGGGAATCGTGTGAATCTGTTTTGGCGGGTCTGGTATAAATTTTAACTAATGGACTGCTAGTATTAACTTGTTGGATTCTCAAGTAAAGCAATGAGTAGATGTGTTGGAGTTATAACTTTCAGGATGGTGAAACCAGAAATTTATTTTAGCTATCTATGTACTGCATGGGAATATTATGCCTGCGTGTCTACATGCTTCAATTTATCAATATATGGTATAACATATATTCTTCCTTTTGTTGCCTGGATTGAATGTATGTGTAATTGCATATTAAATTCTATAATTCATGTGATGACAAAGGTAGCTGGCCGGCTTCCTTTAATGGTAGCTGAAATGGAATGTAAATTAAGATCATTGATGATTCTATTGGTTTTGGTCGGTATTTCAGGCTTTGAGCAAACATATGCTTTTAGTTATACCGATTATAGTTGCATTTGTTGTCTTGCAATATACTTGTTTTGTCCTCAGAGACTGGAAGGAAGGAAACACTTGAAGCTGTCAATCCTATATCCCTTATGTTTTTCCTTGCCTCTTGTCTTGAGTCTAAGTGGTGATGGTGAAAAAAGTGACATTTCAAAGGACTGGTATGGAGTGTTTTGACATCTGGAAAACGTCATGGTGCACTGTTTAGATGGATTAAAGCAGTTGTATATTGCTGTAATAAATTTTTGTGATGCTGATTTGTGCCCAGAGCCTAGAGGTTTGCAACATCCAGAAGTGCTAGCAAGAGAAACAGTGTTTAGTGTAAGTGAGATTGAAGCACTGTATGAACTATTCAAGAAGATCAGCAGTGGAGTAATGGACAAAGGATTAATTACTAAGGATGAATTTCAGTTGGCCTTATTCAAGACAACCAAGAAAGAGAGCTTATTTACAGATAGGGTGTTTGACTTGTTTGACACAAAGCATAGTGGAATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAGCGCATCAATTGATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACAACAAGGATTTATTCAGAGACAGGAGTTAAAACAAATGGTGGTTGCCACTCTAGCTGAATCTGGCATGAATCTTGCAGATGATGTGATTGAAAGCATCATTGACAAGACTTTCGAGGAAGTTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTCTTCAGTATCTCAAAGATATTACAACTACATTTCCCAGTTTTGTATTTCACTCACAAGTTGATGATGTTTGAGGCAGCTACATCATCTATGTCAGTTTCTCTGGTGTTGGCTGAGAAGGTTCTTGTTTCCCTTGAGAGTGGTGAAATTCTGTGAGAAGGATATGGTTAAAATGGAAATGGGCTATTTATATTTTCATTGAACAGAACTTTTCCTTCCCTTTTTGGGTAGATGAGGTTTGTGTTTCGAATAAATGGATTTAATTATTTATTTGCTTCATTATTATTAGGAATGAAAGTAGCATAGGATAGAATATACAGGTGTTTCAGAAATAGCACTAGAAACTTTTGGATAGAAATATATTTTGCCATTATGGCTTCTAAACGGCTCCAGTGAGCTTAGGTGCAGAGTTAAGAATTTGTATGGCAGGTTTCAGCTTTTGTGCCTTAAAAAGGCTAAAACCAATATCGTCCTTTCTATTATCTTTCTTTGGCTTTTATATAGGTAATAGTAAAAAGAGAAATGCTGTCAATATATTCACTAATACTTTTTTAACATATTCTTTATTATTGCCTGAAATTTGG

Coding sequences of Glyma09g01870

Limit To All Plant Sequences

>Glyma09g01870.3   sequence type=CDS   gene model=Glyma09g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCACTGTTTAGATGGATTAAAGCAGTTGTATATTGCTGTAATAAATTTTTGTGATGCTGATTTGTGCCCAGAGCCTAGAGGTTTGCAACATCCAGAAGTGCTAGCAAGAGAAACAGTGTTTAGTGTAAGTGAGATTGAAGCACTGTATGAACTATTCAAGAAGATCAGCAGTGGAGTAATGGACAAAGGATTAATTACTAAGGATGAATTTCAGTTGGCCTTATTCAAGACAACCAAGAAAGAGAGCTTATTTACAGATAGGGTGTTTGACTTGTTTGACACAAAGCATAGTGGAATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAGCGCATCAATTGATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACAACAAGGATTTATTCAGAGACAGGAGTTAAAACAAATGGTGGTTGCCACTCTAGCTGAATCTGGCATGAATCTTGCAGATGATGTGATTGAAAGCATCATTGACAAGACTTTCGAGGAAGTTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTCTTCAGTATCTCAAAGATATTACAACTACATTTCCCAGTTTTGTATTTCACTCACAAGTTGATGATGTTTGA

>Glyma09g01870.4   sequence type=CDS   gene model=Glyma09g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCACTGTTTAGATGGATTAAAGCAGTTGTATATTGCTGTAATAAATTTTTGTGATGCTGATTTGTGCCCAGAGCCTAGAGGTTTGCAACATCCAGAAGTGCTAGCAAGAGAAACAGTGTTTAGTGTAAGTGAGATTGAAGCACTGTATGAACTATTCAAGAAGATCAGCAGTGGAGTAATGGACAAAGGATTAATTACTAAGGATGAATTTCAGTTGGCCTTATTCAAGACAACCAAGAAAGAGAGCTTATTTACAGATAGGGTGTTTGACTTGTTTGACACAAAGCATAGTGGAATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAGCGCATCAATTGATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACAACAAGGATTTATTCAGAGACAGGAGTTAAAACAAATGGTGGTTGCCACTCTAGCTGAATCTGGCATGAATCTTGCAGATGATGTGATTGAAAGCATCATTGACAAGACTTTCGAGGAAGTTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTCTTCAGTATCTCAAAGATATTACAACTACATTTCCCAGTTTTGTATTTCACTCACAAGTTGATGATGTTTGA

Predicted protein sequences of Glyma09g01870

Limit To All Plant Sequences

>Glyma09g01870.3   sequence type=predicted peptide   gene model=Glyma09g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVHCLDGLKQLYIAVINFCDADLCPEPRGLQHPEVLARETVFSVSEIEALYELFKKISSGVMDKGLITKDEFQLALFKTTKKESLFTDRVFDLFDTKHSGILDFKEFALALSVFHPSASIDDKIEFSFQLYDLKQQGFIQRQELKQMVVATLAESGMNLADDVIESIIDKTFEEVDTKHDGKIDKEEWRNLVLQHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDV*

>Glyma09g01870.4   sequence type=predicted peptide   gene model=Glyma09g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVHCLDGLKQLYIAVINFCDADLCPEPRGLQHPEVLARETVFSVSEIEALYELFKKISSGVMDKGLITKDEFQLALFKTTKKESLFTDRVFDLFDTKHSGILDFKEFALALSVFHPSASIDDKIEFSFQLYDLKQQGFIQRQELKQMVVATLAESGMNLADDVIESIIDKTFEEVDTKHDGKIDKEEWRNLVLQHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDV*

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