Glyma09g01720 - SoyBase

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Report for Sequence Feature Glyma09g01720

Feature Type:	gene_model
Chromosome:	Gm09
Start:	1111716
stop:	1114521
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g01720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47710	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein \| chr5:19330470-19331178 FORWARD LENGTH=166	SoyBase	E_val: 1.00E-85	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1030	KOG	Predicted Ca2+-dependent phospholipid-binding protein	JGI		ISS
PTHR26357	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26357:SF5	Panther		JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
UniRef100_C6SXP9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXP9_SOYBN	SoyBase	E_val: 4.00E-113	ISS
UniRef100_Q2HV28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C2 n=2 Tax=Medicago truncatula RepID=Q2HV28_MEDTR	SoyBase	E_val: 1.00E-104	ISS

Expression Patterns of Glyma09g01720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g01720

Paralog	Evidence	Comments
Glyma15g12690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g01720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g014700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g01720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g01720

Limit To All Plant Sequences

>Glyma09g01720.2   sequence type=transcript   gene model=Glyma09g01720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAAGGCTGGTCAATCCTGCGGCAAACACAGTCCATCTGTTAATAATGCATAATCATATCCTTTGACCGACAGGTGTGAATCTCACCTTTTTCTAAATTGGATCATTAAGGCCACCCCACCTGTAGCTACCGGTGAAGAGGTTGTTCCACTGCCTTTAAGTCTCATTCATATTCATTGCTATTCCTCATTCACAATTCACAACAACACACAACATATTATTAAGACACACCCCAAACCAAACCACTTCACACAGAACACATATCCATTGGTGAAGGAGTATCATGGGTGAACAATTAGGGCTACTAAAAGTCATGGTTGTGCAAGGGAAAAGGTTGGTGATCCGGGATTTCAAGACCAGTGATCCTTATGTAGTACTCAAACTAGGGAATCAGACTGCAAAGACCAAGGTAATTAATAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTGAATTTCACTCTGACAGAACCATTGGGAGTTCTGAATTTGGAAGTGTTTGACAAAGATCTTTTGAAGGCTGATGACAAGATGGGAAATGCTTTCTTGAACCTTCAACCAATAGTCTCTGCAGCCAGATTAAGAGACATCTTAAGAGTGTCCTCTGGTGAGACAACATTAAGGAAGGTCATACCTGATGGTGAAAACTGTCTTGTCCGTGAAAGCAGTATCAACTGTGTCAATGGTGAGGTGGTGCAGAATGTTTGGTTAAGGCTTCGTGGAGTTGAGTCTGGGGAACTAGAATTGACTATCAAGTTGGCCACACCTGTTGCTCCTGCAATATAGTGCAACAATTGCATGTGTCATAAGTGTAGATGTCTAACTAACTTTTATGTCTAGTTGAGTCTTGCTTTTGATTAACTCCTGCATAGATGTTTCTACCCAAAAATGAAAAAAGAAAAACTTAAATACGTTTTTTATCTATTAAATTTTGAGTCACTTTTGCCTTTTATTTTCAAATTTAAATTTCTTTCTTTTTAGTCCCTCAATTTAAAAAAAAATCTTTTTAGTCCCTTTTAATTGATTTTTGACTGTTTGAATTCATTAATTGTAGTGGTTTTTTAATGGATGATAGACTAAAAAGAATATTTTTTTAAAATCGAGGACTAAAATAATAATAATTTAAATTTGAGGCATAAAAAACAAAAGTAATCTAATTTGAGAAAATTAAAAACATATTTAAGTATAAAAAAACATTAATAGATGCTTATTCCAATTAAATTTAGCAGTGAGTTGGTGATGTCTCATACCCAGTTAAAAGGGCATTAGAAGCCGCATCTTCAAATCAACAAGTAGAAATTTATGGCTTCTTTAGACTTTATGGTGTTCTTCTCTTGTGTTACCTTGTACTACATACCTTCCTCCCCCAAAATAGTATAAATTAATATTCATTGTAGCTATGAGCATTCATTTGGGTATTGCGTGAGTTTTGATGGTATTGTATTGATCTGCAGATAAGTCAAGAAAAGAGAAATTGTGATGCTTGCTAATTTATACTTCACTTTAGTTATATAAATTTACACATTGAGATGGATCTAGTAAGTATGTATTTGTTTCTATTTATCA

Coding sequences of Glyma09g01720

Limit To All Plant Sequences

>Glyma09g01720.1   sequence type=CDS   gene model=Glyma09g01720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAACAATTAGGGCTACTAAAAGTCATGGTTGTGCAAGGGAAAAGGTTGGTGATCCGGGATTTCAAGACCAGTGATCCTTATGTAGTACTCAAACTAGGGAATCAGACTGCAAAGACCAAGGTAATTAATAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTGAATTTCACTCTGACAGAACCATTGGGAGTTCTGAATTTGGAAGTGTTTGACAAAGATCTTTTGAAGGCTGATGACAAGATGGGAAATGCTTTCTTGAACCTTCAACCAATAGTCTCTGCAGCCAGATTAAGAGACATCTTAAGAGTGTCCTCTGGTGAGACAACATTAAGGAAGGTCATACCTGATGGTGAAAACTGTCTTGTCCGTGAAAGCAGTATCAACTGTGTCAATGGTGAGGTGGTGCAGAATGTTTGGTTAAGGCTTCGTGGAGTTGAGTCTGGGGAACTAGAATTGACTATCAAGTTGGCCACACCTGTTGCTCCTGCAATATAG

>Glyma09g01720.2   sequence type=CDS   gene model=Glyma09g01720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAACAATTAGGGCTACTAAAAGTCATGGTTGTGCAAGGGAAAAGGTTGGTGATCCGGGATTTCAAGACCAGTGATCCTTATGTAGTACTCAAACTAGGGAATCAGACTGCAAAGACCAAGGTAATTAATAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTGAATTTCACTCTGACAGAACCATTGGGAGTTCTGAATTTGGAAGTGTTTGACAAAGATCTTTTGAAGGCTGATGACAAGATGGGAAATGCTTTCTTGAACCTTCAACCAATAGTCTCTGCAGCCAGATTAAGAGACATCTTAAGAGTGTCCTCTGGTGAGACAACATTAAGGAAGGTCATACCTGATGGTGAAAACTGTCTTGTCCGTGAAAGCAGTATCAACTGTGTCAATGGTGAGGTGGTGCAGAATGTTTGGTTAAGGCTTCGTGGAGTTGAGTCTGGGGAACTAGAATTGACTATCAAGTTGGCCACACCTGTTGCTCCTGCAATATAG

Predicted protein sequences of Glyma09g01720

Limit To All Plant Sequences

>Glyma09g01720.1   sequence type=predicted peptide   gene model=Glyma09g01720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEQLGLLKVMVVQGKRLVIRDFKTSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTLTEPLGVLNLEVFDKDLLKADDKMGNAFLNLQPIVSAARLRDILRVSSGETTLRKVIPDGENCLVRESSINCVNGEVVQNVWLRLRGVESGELELTIKLATPVAPAI*

>Glyma09g01720.2   sequence type=predicted peptide   gene model=Glyma09g01720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEQLGLLKVMVVQGKRLVIRDFKTSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTLTEPLGVLNLEVFDKDLLKADDKMGNAFLNLQPIVSAARLRDILRVSSGETTLRKVIPDGENCLVRESSINCVNGEVVQNVWLRLRGVESGELELTIKLATPVAPAI*

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