Glyma09g01630 - SoyBase

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Report for Sequence Feature Glyma09g01630

Feature Type:	gene_model
Chromosome:	Gm09
Start:	1042949
stop:	1045175
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g01630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47630	AT	Annotation by Michelle Graham. TAIR10: mitochondrial acyl carrier protein 3 \| chr5:19306397-19306885 FORWARD LENGTH=131	SoyBase	E_val: 2.00E-37	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0051607	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to virus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000036	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	SoyBase	N/A	ISS
PTHR20863	Panther	ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED	JGI		ISS
PTHR20863:SF5	Panther	ACYL CARRIER PROTEIN	JGI		ISS
PF00550	PFAM	Phosphopantetheine attachment site	JGI		ISS
UniRef100_I1L033	UniRef	Annotation by Michelle Graham. Best UniRef hit: Acyl carrier protein n=2 Tax=Glycine max RepID=I1L033_SOYBN	SoyBase	E_val: 2.00E-107	ISS
UniRef100_I1L033	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyl carrier protein n=2 Tax=Glycine max RepID=I1L033_SOYBN	SoyBase	E_val: 2.00E-107	ISS

Expression Patterns of Glyma09g01630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g01630 not represented in the dataset	Glyma09g01630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g01630

Paralog	Evidence	Comments
Glyma15g12561	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g01630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g014000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g01630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g01630

Limit To All Plant Sequences

>Glyma09g01630.5   sequence type=transcript   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTTCTGAGTAAGAAAACATTCAGTTAAAATATTAATTTTGTATAAATATACAAAATAAAACCGAGTTGCTACGTAACTGTGAAGAGAAGGATTGAAAGTGATTGAGCGTAGGAGCGTGCGAGTGTGAGGTAAAGAAAAAAAGAGTGTATTTTCGTTTTGACTCTTTCTATCAGGCATTATATCAAACACCTATCCGATCGCTTCATTTGTCAGTATATTCTGACAAAATCCCAGTCCACTGCGCCGAATCTCTGCCTGGATCATTTGCTGACTTGAATATGCAAAGCATAAGGAAATCTATCTTGACTCGTGTGAATTTGAGGAGATCAACCGAAAGATGGTTTTTGGCTGGGGATGAGGGTGCTCATAAGCAATTGAGATGTTGGTGCTCTTCAACAGCTGTCAGCTCTGATCAAATACTGGACCGAGTGATTGCACTGGCCAAGAAATATGATAAAATTGATGGCTCAAAGGTCACTGAAACAGCTGATTTTCAAAAAGACTTGAACCTGGACAGTTTGGACCGAGTGGAACTCATTATGGCCCTTGAAGAAGAATTTTCTATTGAAATCCCTGATGAGAAGGCTGATAAGCTTGCTTGCTGTGCTGATATTGCAAAATACATAGCAGAGGTTGATCAGAAAAACCTGGAAAAGCCCTGACTTCTCAGTTTTGTTTATGGGATGTACATTCCATTTTTTGTGGCTGTGCTACATGGATCTCTCTTAAGTCAGCTTAGTTGCATTATGCATATTAGTTGATCGACAGTTTGCTTCGTTCGGGTAGTTATTGGTAGAATGCATAAGAACCCCATGATTTACATGTTGAGTTTTAGATCTGTTGAAATGCACTGATTCACTCAATAAAATAATTGTGAATTTTGTTTTTAATCGACAAATGGTAGTTTGTTAGTTTTTGTGAAATCCTATTCTTACACACGAGGCGTGTAGTCGCTTATCCTTTACTCAGTTCTTGCCTCAATGTTGAA

>Glyma09g01630.6   sequence type=transcript   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGAAAGTGATTGAGCGTAGGAGCGTGCGAGTGTGAGGTAAAGAAAAAAAGAGTGTATTTTCGTTTTGACTCTTTCTATCAGGCATTATATCAAACACCTATCCGATCGCTTCATTTGTCAGTATATTCTGACAAAATCCCAGTCCACTGCGCCGAATCTCTAGTGCCTGGATCATTTGCTGACTTGAATATGCAAAGCATAAGGAAATCTATCTTGACTCGTGTGAATTTGAGGAGATCAACCGAAAGATGGTTTTTGGCTGGGGATGAGGGTGCTCATAAGCAATTGAGATGTTGGTGCTCTTCAACAGCTGTCAGCTCTGATCAAATACTGGACCGAGTGATTGCACTGGCCAAGAAATATGATAAAATTGATGGCTCAAAGGTCACTGAAACAGCTGATTTTCAAAAAGACTTGAACCTGGACAGTTTGGACCGAGTGGAACTCATTATGGCCCTTGAAGAAGAATTTTCTATTGAAATCCCTGATGAGAAGGCTGATAAGCTTGCTTGCTGTGCTGATATTGCAAAATACATAGCAGAGGTTGATCAGAAAAACCTGGAAAAGCCCTGACTTCTCAGTTTTGTTTATGGGATGTACATTCCATTTTTTGTGGCTGTGCTACATGGATCTCTCTTAAGTCAGCTTAGTTGCATTATGCATATTAGTTGATCGACAGTTTGCTTCGTTCGGGTAGTTATTGGTAGAATGCATAAGAACCCCATGATTTACATGTTGAGTTTTAGATCTGTTGAAATGCACTGATTCACTCAATAAAATAATTGTGAATTTTGTTTTTAATCGACAAATGGTAGTTTGTTAGTTTTTGTGAAATCCTATTCTTACACACGAGGCGTGTAGTCGCTTATCCTTTACTCAGTTCTTGCCTCAATGTTGAA

>Glyma09g01630.7   sequence type=transcript   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAAAGTGATTGAGCGTAGGAGCGTGCGAGTGTGAGGTAAAGAAAAAAAGAGTGTATTTTCGTTTTGACTCTTTCTATCAGGCATTATATCAAACACCTATCCGATCGCTTCATTTGTCAGTATATTCTGACAAAATCCCAGTCCACTGCGCCGAATCTCGTGAGTGCCCACTTCTGTCTCTTCCTCTCTCTTTACAATTTTCTCACCTTCAACCTTAATTCCACTCCCACTTGTTGCCATTTGATGAATGCTATGCTATGGGTAGGTTTAGCCACTCCTAGTTTGTTACATTATATGGAAACATGATATCACATTTCAGTGCCTGGATCATTTGCTGACTTGAATATGCAAAGCATAAGGAAATCTATCTTGACTCGTGTGAATTTGAGGAGATCAACCGAAAGATGGTTTTTGGCTGGGGATGAGGGTGCTCATAAGCAATTGAGATGTTGGTGCTCTTCAACAGCTGTCAGCTCTGATCAAATACTGGACCGAGTGATTGCACTGGCCAAGAAATATGATAAAATTGATGGCTCAAAGGTCACTGAAACAGCTGATTTTCAAAAAGACTTGAACCTGGACAGTTTGGACCGAGTGGAACTCATTATGGCCCTTGAAGAAGAATTTTCTATTGAAATCCCTGATGAGAAGGCTGATAAGCTTGCTTGCTGTGCTGATATTGCAAAATACATAGCAGAGGTTGATCAGAAAAACCTGGAAAAGCCCTGACTTCTCAGTTTTGTTTATGGGATGTACATTCCATTTTTTGTGGCTGTGCTACATGGATCTCTCTTAAGTCAGCTTAGTTGCATTATGCATATTAGTTGATCGACAGTTTGCTTCGTTCGGGTAGTTATTGGTAGAATGCATAAGAACCCCATGATTTACATGTTGAGTTTTAGATCTGTTGAAATGCACTGATTCACTCAATAAAATAATTGTGAATTTTGTTTTTAATCGACAAATGGTAGTTTGTTAGTTTTTGTGAAATCCTATTCTTACACACGAGGCGTGTAGTCGCTTATCCTTTACTCAGTTCTTGCCTCAATGTTGAA

Coding sequences of Glyma09g01630

Limit To All Plant Sequences

>Glyma09g01630.1   sequence type=CDS   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACCTCTTCTATGTTCTGAAACTAACACCTTGGATAACTTTGAAGTAGTGCCTGGATCATTTGCTGACTTGAATATGCAAAGCATAAGGAAATCTATCTTGACTCGTGTGAATTTGAGGAGATCAACCGAAAGATGGTTTTTGGCTGGGGATGAGGGTGCTCATAAGCAATTGAGATGTTGGTGCTCTTCAACAGCTGTCAGCTCTGATCAAATACTGGACCGAGTGATTGCACTGGCCAAGAAATATGATAAAATTGATGGCTCAAAGGTCACTGAAACAGCTGATTTTCAAAAAGACTTGAACCTGGACAGTTTGGACCGAGTGGAACTCATTATGGCCCTTGAAGAAGAATTTTCTATTGAAATCCCTGATGAGAAGGCTGATAAGCTTGCTTGCTGTGCTGATATTGCAAAATACATAGCAGAGGTTGATCAGAAAAACCTGGAAAAGCCCTGA

>Glyma09g01630.5   sequence type=CDS   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGCATAAGGAAATCTATCTTGACTCGTGTGAATTTGAGGAGATCAACCGAAAGATGGTTTTTGGCTGGGGATGAGGGTGCTCATAAGCAATTGAGATGTTGGTGCTCTTCAACAGCTGTCAGCTCTGATCAAATACTGGACCGAGTGATTGCACTGGCCAAGAAATATGATAAAATTGATGGCTCAAAGGTCACTGAAACAGCTGATTTTCAAAAAGACTTGAACCTGGACAGTTTGGACCGAGTGGAACTCATTATGGCCCTTGAAGAAGAATTTTCTATTGAAATCCCTGATGAGAAGGCTGATAAGCTTGCTTGCTGTGCTGATATTGCAAAATACATAGCAGAGGTTGATCAGAAAAACCTGGAAAAGCCCTGA

>Glyma09g01630.6   sequence type=CDS   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGCATAAGGAAATCTATCTTGACTCGTGTGAATTTGAGGAGATCAACCGAAAGATGGTTTTTGGCTGGGGATGAGGGTGCTCATAAGCAATTGAGATGTTGGTGCTCTTCAACAGCTGTCAGCTCTGATCAAATACTGGACCGAGTGATTGCACTGGCCAAGAAATATGATAAAATTGATGGCTCAAAGGTCACTGAAACAGCTGATTTTCAAAAAGACTTGAACCTGGACAGTTTGGACCGAGTGGAACTCATTATGGCCCTTGAAGAAGAATTTTCTATTGAAATCCCTGATGAGAAGGCTGATAAGCTTGCTTGCTGTGCTGATATTGCAAAATACATAGCAGAGGTTGATCAGAAAAACCTGGAAAAGCCCTGA

>Glyma09g01630.7   sequence type=CDS   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGCATAAGGAAATCTATCTTGACTCGTGTGAATTTGAGGAGATCAACCGAAAGATGGTTTTTGGCTGGGGATGAGGGTGCTCATAAGCAATTGAGATGTTGGTGCTCTTCAACAGCTGTCAGCTCTGATCAAATACTGGACCGAGTGATTGCACTGGCCAAGAAATATGATAAAATTGATGGCTCAAAGGTCACTGAAACAGCTGATTTTCAAAAAGACTTGAACCTGGACAGTTTGGACCGAGTGGAACTCATTATGGCCCTTGAAGAAGAATTTTCTATTGAAATCCCTGATGAGAAGGCTGATAAGCTTGCTTGCTGTGCTGATATTGCAAAATACATAGCAGAGGTTGATCAGAAAAACCTGGAAAAGCCCTGA

Predicted protein sequences of Glyma09g01630

Limit To All Plant Sequences

>Glyma09g01630.1   sequence type=predicted peptide   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPLLCSETNTLDNFEVVPGSFADLNMQSIRKSILTRVNLRRSTERWFLAGDEGAHKQLRCWCSSTAVSSDQILDRVIALAKKYDKIDGSKVTETADFQKDLNLDSLDRVELIMALEEEFSIEIPDEKADKLACCADIAKYIAEVDQKNLEKP*

>Glyma09g01630.5   sequence type=predicted peptide   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSIRKSILTRVNLRRSTERWFLAGDEGAHKQLRCWCSSTAVSSDQILDRVIALAKKYDKIDGSKVTETADFQKDLNLDSLDRVELIMALEEEFSIEIPDEKADKLACCADIAKYIAEVDQKNLEKP*

>Glyma09g01630.6   sequence type=predicted peptide   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSIRKSILTRVNLRRSTERWFLAGDEGAHKQLRCWCSSTAVSSDQILDRVIALAKKYDKIDGSKVTETADFQKDLNLDSLDRVELIMALEEEFSIEIPDEKADKLACCADIAKYIAEVDQKNLEKP*

>Glyma09g01630.7   sequence type=predicted peptide   gene model=Glyma09g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSIRKSILTRVNLRRSTERWFLAGDEGAHKQLRCWCSSTAVSSDQILDRVIALAKKYDKIDGSKVTETADFQKDLNLDSLDRVELIMALEEEFSIEIPDEKADKLACCADIAKYIAEVDQKNLEKP*

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