Glyma09g01556 - SoyBase

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Report for Sequence Feature Glyma09g01556

Feature Type:	gene_model
Chromosome:	Gm09
Start:	994515
stop:	1000368
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g01556

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17220	AT	Annotation by Michelle Graham. TAIR10: microtubule-associated proteins 70-5 \| chr4:9657008-9659405 REVERSE LENGTH=513	SoyBase	E_val: 8.00E-177	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0010051	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0008017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule binding	SoyBase	N/A	ISS
PF07058	PFAM	Myosin II heavy chain-like	JGI		ISS
UniRef100_B9SA68	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myosin heavy chain, clone, putative n=1 Tax=Ricinus communis RepID=B9SA68_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MFR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MFR1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g01556

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g01556 not represented in the dataset	Glyma09g01556 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g01556

Paralog	Evidence	Comments
Glyma15g12490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g01556 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g013100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g01556

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g01556

Limit To All Plant Sequences

>Glyma09g01556.2   sequence type=transcript   gene model=Glyma09g01556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACTTCTAAGGATAAGAAATAGAGAGAAAGTAACCGTTGCTGTCAAAGCTAGAATTAAGGAGGAGCTAATGAGTGACCAAGCCTCATTTGTTGTTGGACAAAGCCTATTTGTGTGAGCATTTGGCAGCACCAGAAAGAGGAAAATGGTGGCTAGTGAAGAGATATATGGTGGGGAAGAACTTTCTCTTGTCCAACCAGACCCTATGGGGTTGCAGATTGATCGTTTGCACAACCAACTCACAGAAAAGGTCAAGGAACTAGCAAATTGCCAGAGTGAAATCAAGGCCTTAAGGGCAACTGAAGCTAAAAAGGACAAGGCCATAGAAGAGCTGAGAAATGAAGTCGGTAAGCTGGACGATAAACTAAGACTTACTGAGGATCATCTCAAACATAAGAAGCTAGAAATCAAGAAACTGACAGAGGAAAAGAAAGATGCATTGGCCGCACAATATGCAGCAGAAGCAACTCTTAGAAGGTTACATGCAGATCAAAAGGAAGATGATTTTGTTCCTCTTGAGAGTGTCATTACTCCTCTTGAAGCTGAGATTAAGATGTATAGGAATGAGATTGCATCACTTCAAGAAGATAAGAAAGCCTTGGAACGACTCACAAAGTCAAAAGAGGCTGCACTGCTTGAAGCAGAGAAGATTTTAAGAAGTGCACTAGAGAGAGTTTTAATAGTTGAGGAAGTTCAAAATGAGAATTTTGACTTAAAGAGACAGATTGAAATCTGCCAGGAGGAGATCAAAATCTTAGAGAAAACACATCGTCAAAAGATTTTGGAAGTTGAAAAACTTAGCCAAACCATCCATGAACTGGAGGAGATCATCCTATCCAGTGGAGTCAATGCTAATGCCATTCGTGATTATCAGCGACAGATTTCTGAATTGCAAGAGGAGAAAAGGACACTGGAGAGGGAGCTAGCAAGGGTAAAAGTTTCAGCCAACAGAGTTGCAACTGTTGTGGCTAATGAGTGGAAGGATGAGAATGACAAGGTCATGCCTGTCAAGCAATGGCTGGAAGAGAGAAGGATAATGCAGGCAGAGATGCAACGATTAAAAGATAAGCTAGCTATATCAGAGAGAACAGCAAAGGCAGAGTCACAATTGAAGGATAAACTGAAGCTGAGGTTAAAAACACTAGAAGAAGGCTTAAAGCATTTCTCAAATCACCCAGTCAGTTCAAATTCCGTGTCTGCAAAATCAGAAAAGTCTAAGATCTTAAGCTTCCTAACGACCAATAGCGGACTGAGAAACAGATCCACATCACAACCAAGGGGATCTGCTATTGGAAGCTCTTTGTTCCAAAAGTCAAATGCAAAAAGCAACACAGACAGTGTTACTGGGAGCCTAATACCAGGCAGCATTATGAAAAAGAAATATGGTTCGGCAGAAAATGTGTTGAAGAAAGGTATATGGGCATCAAGACACAAAGTTGCTGATAGTGATGAAAAAGAAAATGAGATGCAGGTGAACGCAGGCATGAATTCAAATAAATGCAATGATGAAAAAGAAGCAGCAGAAATTAAAACCAGTATTGATGATAATGACGACTCTAAAAGCAATAGCTGTAATGATTTAGGCAGCAATGATGTGGTCTCAGGTTTTTTATATGATAGGCTTCAAAAAGAGTTCATCAATTTGAGAAAGTCTTGTGAAATTAAAGAGAGTAATTTGCACACTAAAGATGAAGAAATAAAGATTCTCACTAAGAAAGTTGATGCATTGACAAAGGCTATGGAAATAGAGTGGAAAAAAATGAAAAGAGAAGCAGCTGCCAGAGAGAAGGAGGCTGCATCAACAAAATCAGATGATAACAGGAAACTCAGACGCTCAAACTCCTCTAGAAGGATGATATGATGAAGAACACATTGAAGAGTCTTTATTTAGAGAAATCTGAAGGCAATTTAATAATCAATGGCATCTTGTGATTTTTCTTTGTAAATAAAAAGCAAAAATTTAGTGAGGTAGTATGTTGAAATAAAGTTTCACTGGGCTAAGGGAGTCTGGGATCTGACTCTGTGCATACTACATACACTAAATTTATTTAAATGGCATCCTCTGTGCTCTGTGATTGTGTGTATTACATACATACTATCCCTGTTTGTCAAATGTATCTGCAGAGAGATGAAATATATATGATGAACATTTGGAAAATATTTGAATTACATGTCTGCATTATGTGTATCAAAAATCTTATTTACCAAAGATGATTATAAAGAAAGACTATTCCTGAATA

Coding sequences of Glyma09g01556

Limit To All Plant Sequences

>Glyma09g01556.1   sequence type=CDS   gene model=Glyma09g01556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTAGTGAAGAGATATATGGTGGGGAAGAACTTTCTCTTGTCCAACCAGACCCTATGGGGTTGCAGATTGATCGTTTGCACAACCAACTCACAGAAAAGGTCAAGGAACTAGCAAATTGCCAGAGTGAAATCAAGGCCTTAAGGGCAACTGAAGCTAAAAAGGACAAGGCCATAGAAGAGCTGAGAAATGAAGTCGGTAAGCTGGACGATAAACTAAGACTTACTGAGGATCATCTCAAACATAAGAAGCTAGAAATCAAGAAACTGACAGAGGAAAAGAAAGATGCATTGGCCGCACAATATGCAGCAGAAGCAACTCTTAGAAGGTTACATGCAGATCAAAAGGAAGATGATTTTGTTCCTCTTGAGAGTGTCATTACTCCTCTTGAAGCTGAGATTAAGATGTATAGGAATGAGATTGCATCACTTCAAGAAGATAAGAAAGCCTTGGAACGACTCACAAAGTCAAAAGAGGCTGCACTGCTTGAAGCAGAGAAGATTTTAAGAAGTGCACTAGAGAGAGTTTTAATAGTTGAGGAAGTTCAAAATGAGAATTTTGACTTAAAGAGACAGATTGAAATCTGCCAGGAGGAGATCAAAATCTTAGAGAAAACACATCGTCAAAAGATTTTGGAAGTTGAAAAACTTAGCCAAACCATCCATGAACTGGAGGAGATCATCCTATCCAGTGGAGTCAATGCTAATGCCATTCGTGATTATCAGCGACAGATTTCTGAATTGCAAGAGGAGAAAAGGACACTGGAGAGGGAGCTAGCAAGGGTAAAAGTTTCAGCCAACAGAGTTGCAACTGTTGTGGCTAATGAGTGGAAGGATGAGAATGACAAGGTCATGCCTGTCAAGCAATGGCTGGAAGAGAGAAGGATAATGCAGGCAGAGATGCAACGATTAAAAGATAAGCTAGCTATATCAGAGAGAACAGCAAAGGCAGAGTCACAATTGAAGGATAAACTGAAGCTGAGGTTAAAAACACTAGAAGAAGGCTTAAAGCATTTCTCAAATCACCCAGTCAGTTCAAATTCCGTGTCTGCAAAATCAGAAAAGTCTAAGATCTTAAGCTTCCTAACGACCAATAGCGGACTGAGAAACAGATCCACATCACAACCAAGGGGATCTGCTATTGGAAGCTCTTTGTTCCAAAAGTCAAATGCAAAAAGCAACACAGACAGTGTTACTGGGAGCCTAATACCAGGCAGCATTATGAAAAAGAAATATGGTTCGGCAGAAAATGTGTTGAAGAAAGGTATATGGGCATCAAGACACAAAGTTGCTGATAGTGATGAAAAAGAAAATGAGATGCAGGTGAACGCAGGCATGAATTCAAATAAATGCAATGATGAAAAAGAAGCAGCAGAAATTAAAACCAGTATTGATGATAATGACGACTCTAAAAGCAATAGCTGTAATGATTTAGGCAGCAATGATGTGGTCTCAGGTTTTTTATATGATAGGCTTCAAAAAGAGTTCATCAATTTGAGAAAGTCTTGTGAAATTAAAGAGAGTAATTTGCACACTAAAGATGAAGAAATAAAGATTCTCACTAAGAAAGTTGATGCATTGACAAAGGCTATGGAAATAGAGTGGAAAAAAATGAAAAGAGAAGCAGCTGCCAGAGAGAAGGAGGCTGCATCAACAAAATCAGATGATAACAGGAAACTCAGACGCTCAAACTCCTCTAGAAGGATGATATGA

>Glyma09g01556.2   sequence type=CDS   gene model=Glyma09g01556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTAGTGAAGAGATATATGGTGGGGAAGAACTTTCTCTTGTCCAACCAGACCCTATGGGGTTGCAGATTGATCGTTTGCACAACCAACTCACAGAAAAGGTCAAGGAACTAGCAAATTGCCAGAGTGAAATCAAGGCCTTAAGGGCAACTGAAGCTAAAAAGGACAAGGCCATAGAAGAGCTGAGAAATGAAGTCGGTAAGCTGGACGATAAACTAAGACTTACTGAGGATCATCTCAAACATAAGAAGCTAGAAATCAAGAAACTGACAGAGGAAAAGAAAGATGCATTGGCCGCACAATATGCAGCAGAAGCAACTCTTAGAAGGTTACATGCAGATCAAAAGGAAGATGATTTTGTTCCTCTTGAGAGTGTCATTACTCCTCTTGAAGCTGAGATTAAGATGTATAGGAATGAGATTGCATCACTTCAAGAAGATAAGAAAGCCTTGGAACGACTCACAAAGTCAAAAGAGGCTGCACTGCTTGAAGCAGAGAAGATTTTAAGAAGTGCACTAGAGAGAGTTTTAATAGTTGAGGAAGTTCAAAATGAGAATTTTGACTTAAAGAGACAGATTGAAATCTGCCAGGAGGAGATCAAAATCTTAGAGAAAACACATCGTCAAAAGATTTTGGAAGTTGAAAAACTTAGCCAAACCATCCATGAACTGGAGGAGATCATCCTATCCAGTGGAGTCAATGCTAATGCCATTCGTGATTATCAGCGACAGATTTCTGAATTGCAAGAGGAGAAAAGGACACTGGAGAGGGAGCTAGCAAGGGTAAAAGTTTCAGCCAACAGAGTTGCAACTGTTGTGGCTAATGAGTGGAAGGATGAGAATGACAAGGTCATGCCTGTCAAGCAATGGCTGGAAGAGAGAAGGATAATGCAGGCAGAGATGCAACGATTAAAAGATAAGCTAGCTATATCAGAGAGAACAGCAAAGGCAGAGTCACAATTGAAGGATAAACTGAAGCTGAGGTTAAAAACACTAGAAGAAGGCTTAAAGCATTTCTCAAATCACCCAGTCAGTTCAAATTCCGTGTCTGCAAAATCAGAAAAGTCTAAGATCTTAAGCTTCCTAACGACCAATAGCGGACTGAGAAACAGATCCACATCACAACCAAGGGGATCTGCTATTGGAAGCTCTTTGTTCCAAAAGTCAAATGCAAAAAGCAACACAGACAGTGTTACTGGGAGCCTAATACCAGGCAGCATTATGAAAAAGAAATATGGTTCGGCAGAAAATGTGTTGAAGAAAGGTATATGGGCATCAAGACACAAAGTTGCTGATAGTGATGAAAAAGAAAATGAGATGCAGGTGAACGCAGGCATGAATTCAAATAAATGCAATGATGAAAAAGAAGCAGCAGAAATTAAAACCAGTATTGATGATAATGACGACTCTAAAAGCAATAGCTGTAATGATTTAGGCAGCAATGATGTGGTCTCAGGTTTTTTATATGATAGGCTTCAAAAAGAGTTCATCAATTTGAGAAAGTCTTGTGAAATTAAAGAGAGTAATTTGCACACTAAAGATGAAGAAATAAAGATTCTCACTAAGAAAGTTGATGCATTGACAAAGGCTATGGAAATAGAGTGGAAAAAAATGAAAAGAGAAGCAGCTGCCAGAGAGAAGGAGGCTGCATCAACAAAATCAGATGATAACAGGAAACTCAGACGCTCAAACTCCTCTAGAAGGATGATATGA

Predicted protein sequences of Glyma09g01556

Limit To All Plant Sequences

>Glyma09g01556.1   sequence type=predicted peptide   gene model=Glyma09g01556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVASEEIYGGEELSLVQPDPMGLQIDRLHNQLTEKVKELANCQSEIKALRATEAKKDKAIEELRNEVGKLDDKLRLTEDHLKHKKLEIKKLTEEKKDALAAQYAAEATLRRLHADQKEDDFVPLESVITPLEAEIKMYRNEIASLQEDKKALERLTKSKEAALLEAEKILRSALERVLIVEEVQNENFDLKRQIEICQEEIKILEKTHRQKILEVEKLSQTIHELEEIILSSGVNANAIRDYQRQISELQEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVKQWLEERRIMQAEMQRLKDKLAISERTAKAESQLKDKLKLRLKTLEEGLKHFSNHPVSSNSVSAKSEKSKILSFLTTNSGLRNRSTSQPRGSAIGSSLFQKSNAKSNTDSVTGSLIPGSIMKKKYGSAENVLKKGIWASRHKVADSDEKENEMQVNAGMNSNKCNDEKEAAEIKTSIDDNDDSKSNSCNDLGSNDVVSGFLYDRLQKEFINLRKSCEIKESNLHTKDEEIKILTKKVDALTKAMEIEWKKMKREAAAREKEAASTKSDDNRKLRRSNSSRRMI*

>Glyma09g01556.2   sequence type=predicted peptide   gene model=Glyma09g01556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVASEEIYGGEELSLVQPDPMGLQIDRLHNQLTEKVKELANCQSEIKALRATEAKKDKAIEELRNEVGKLDDKLRLTEDHLKHKKLEIKKLTEEKKDALAAQYAAEATLRRLHADQKEDDFVPLESVITPLEAEIKMYRNEIASLQEDKKALERLTKSKEAALLEAEKILRSALERVLIVEEVQNENFDLKRQIEICQEEIKILEKTHRQKILEVEKLSQTIHELEEIILSSGVNANAIRDYQRQISELQEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVKQWLEERRIMQAEMQRLKDKLAISERTAKAESQLKDKLKLRLKTLEEGLKHFSNHPVSSNSVSAKSEKSKILSFLTTNSGLRNRSTSQPRGSAIGSSLFQKSNAKSNTDSVTGSLIPGSIMKKKYGSAENVLKKGIWASRHKVADSDEKENEMQVNAGMNSNKCNDEKEAAEIKTSIDDNDDSKSNSCNDLGSNDVVSGFLYDRLQKEFINLRKSCEIKESNLHTKDEEIKILTKKVDALTKAMEIEWKKMKREAAAREKEAASTKSDDNRKLRRSNSSRRMI*

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