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Report for Sequence Feature Glyma09g01501

Feature Type:gene_model
Chromosome:Gm09
Start:952368
stop:958377
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g01501
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16420AT Annotation by Michelle Graham. TAIR10: homolog of yeast ADA2 2B | chr4:9262805-9265775 REVERSE LENGTH=483 SoyBaseE_val: 0ISS
GO:0000956GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0008284GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation SoyBaseN/AISS
GO:0009631GO-bp Annotation by Michelle Graham. GO Biological Process: cold acclimation SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0042127GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0003713GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR12374Panther TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED JGI ISS
PTHR12374:SF12Panther MYB FAMILY TRANSCRIPTION FACTOR JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
PF00569PFAM Zinc finger, ZZ type, JGI ISS
PF04433PFAM SWIRM domain JGI ISS
UniRef100_G7IPA7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase complex component n=1 Tax=Medicago truncatula RepID=G7IPA7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MFQ5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFQ5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g01501
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g01501 not represented in the dataset
Glyma09g01501 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g01501
ParalogEvidenceComments
Glyma15g12400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g01501 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g012500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g01501
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g01501
>Glyma09g01501.1   sequence type=CDS   gene model=Glyma09g01501   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGCTCTCGTGGGAATTTCCACCACGCCGATGAGGACCCCAACCAGAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAGAATTCGGAGTCTGGAGCTGCAGGCCAAGGAGCAGGCGAAGGGAAAAAGGCTCTGTACCACTGCAATTATTGTAATAAGGATATAACAGGAAAAATCCGTATTAAGTGTGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCATAAAAGCAACCACCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTTGCCGAGCATGTTGGAACCAAAAACAAAGAGTCATGCATAGAACACTATAGGAATGTATACCTGAATTCCCCGTTCTTTCCTGTTCCGGATATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCGAAAGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGCGGATCTTAGTATAAAGGCAGAATCTTCCTTTTCTCCATCTAGAGTCAAGGTTGAAGATTCGCATAAAGCTGGCTCTGCTAATCGTTTGGCATCCAGTTTGAATTCAGAGTCGGATGGCCCCTCGGGTAACACACATGCTGCAAACCAAAAGGCATCTAATGTGGGCCGTGGAAAAGGTGGTCCAGGAATCATTAAAATGGAAGATTCTCAACTAGACAGAGATTTTGGAGGAAAAAAGCCTACTTCCTCTGGAAATGAAGGTCCTTCTTTAGTAGAATCGAGTGGTTATAACGCCAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTTGCTGAAATGGAATTTAAGGACACTGACACTGATGATGAGCGAGAGCTGAAACTACGGGTGTTGCGTTTCTATGCAAAAAGGCTTGATGAAAGAAAGCGAAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTTACACCTGAGGAGAAGGCAATATGTCGGAATTATGACTTATTCATGCGCTTTCATACTAAGGAGGAGCATGAGGAATTGCTTAGAACCGTTATCTCTGAACATAGAACTCGTAAAAGACTTCAAGACCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCAATTCAGCTGAAGCTGATAGATATCTGGCACAAAAGAGAAAAAGGGAAGCTGAAGAAAGTGCTCGTAGGACAAAAGAAAGTGCTCAGGGTGGCCCAAGCAATCTAGGGGTTTCTAATGCATTGATGTCTCCAGACTCTGCTGGCAAGGATTTGAGAGGAAGACCTGCAGGGCCTGCTACTTCTAGTTCTGTCAATGAAATGGACGTGACAGGATACTATGGGGCAGATTTACTTTCTGAATCGGAGAAACGTTTATGCTGTGAGCTAAGGTTGCCTCCAGCCATGTATCTAAAGATGCAAGAGCAGCTGTCTCTACAAATACTTGCTGGCACTGTCACTGCAAAATCTGATGCTCATCAATTGTTCAAGATGGATGCCATGAAAATTGACAGGGTGTATGATATTCTCATTAAAAAGGGGATTGGTTCCCCCTGA
Predicted protein sequences of Glyma09g01501
>Glyma09g01501.1   sequence type=predicted peptide   gene model=Glyma09g01501   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYRNVYLNSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMADLSIKAESSFSPSRVKVEDSHKAGSANRLASSLNSESDGPSGNTHAANQKASNVGRGKGGPGIIKMEDSQLDRDFGGKKPTSSGNEGPSLVESSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDTDDERELKLRVLRFYAKRLDERKRRKDFILERNLLYPNPFEKDFTPEEKAICRNYDLFMRFHTKEEHEELLRTVISEHRTRKRLQDLKEARAAGCRNSAEADRYLAQKRKREAEESARRTKESAQGGPSNLGVSNALMSPDSAGKDLRGRPAGPATSSSVNEMDVTGYYGADLLSESEKRLCCELRLPPAMYLKMQEQLSLQILAGTVTAKSDAHQLFKMDAMKIDRVYDILIKKGIGSP*






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