SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g01470

Feature Type:gene_model
Chromosome:Gm09
Start:935294
stop:938542
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g01470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35760AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr2:15032059-15033094 FORWARD LENGTH=201 SoyBaseE_val: 3.00E-87ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11615Panther NITRATE, FROMATE, IRON DEHYDROGENASE JGI ISS
PTHR11615:SF57Panther INTEGRAL MEMBRANE FAMILY PROTEIN JGI ISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_A7R385UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein GSVIVT00013502001 n=1 Tax=Vitis vinifera RepID=CSPLC_VITVI SoyBaseE_val: 9.00E-105ISS
UniRef100_I1L016UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L016_SOYBN SoyBaseE_val: 3.00E-143ISS

Expression Patterns of Glyma09g01470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g01470
ParalogEvidenceComments
Glyma15g12370 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g01470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g012200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g01470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g01470
>Glyma09g01470.1   sequence type=CDS   gene model=Glyma09g01470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGCTATTTGGGTGTAGGTGTTAGTCCTGGGAATGTCCCAGTTTACCACAGCACAAATGTGAACGTGTTAGATAGGAGGATCAAGATAACAGAGTTGGTGTTGAGGTGTGTGATCCTTGGTTTAGGGGTTCTTGCAGCTGTTCTTGTGGGGACTGATTCCCAAGTCAAGGAGTTTTTCTCATTTCAGAAGGAAGCTAAATTTACAGACATGAAGTCTTTGGTGTTCCTGGTGGTTGCAAATGGGTTAGCTTCTGGCTACTCCTTAATCCAAGGGTTGCGCTGTATCATTAGTATGATCAGAGGAAGAGTACTCTTCAGCAAGCCCCTAGCTTGGGCCATTTTTTCTGGTGATCAGGTAATGGCCTATGTAACAGTGGCGACAGTGGTGGCGGCAGGACAATCGGGTGTGATTGCAAGGGTTGGTCAGCCAGAACTGCAATGGATGAAGATATGCAACATGTATGGGAAATTCTGCAACCAAGTGGGAGAAGGGATAGCTAGTGCTTTTGTGGCTAGCCTTAGCATGGTGGTCCTGTCTTGTATTTCTGCTTTCAGTCTCTTCCGTTTATATGGTGGTAACAAAACCAAAAATGTGTTGGTAGGTTAG
Predicted protein sequences of Glyma09g01470
>Glyma09g01470.1   sequence type=predicted peptide   gene model=Glyma09g01470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSYLGVGVSPGNVPVYHSTNVNVLDRRIKITELVLRCVILGLGVLAAVLVGTDSQVKEFFSFQKEAKFTDMKSLVFLVVANGLASGYSLIQGLRCIISMIRGRVLFSKPLAWAIFSGDQVMAYVTVATVVAAGQSGVIARVGQPELQWMKICNMYGKFCNQVGEGIASAFVASLSMVVLSCISAFSLFRLYGGNKTKNVLVG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo