Glyma09g01330 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma09g01330): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma09g01330): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma09g01330

Feature Type:	gene_model
Chromosome:	Gm09
Start:	817561
stop:	821015
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g01330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12560	AT	Annotation by Michelle Graham. TAIR10: F-box and associated interaction domains-containing protein \| chr4:7441815-7443157 FORWARD LENGTH=413	SoyBase	E_val: 1.00E-74	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0042177	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR10775	Panther	AC-LIKE TRANSPOSASE-RELATED	JGI		ISS
PTHR10775:SF7	Panther	TRANSPOSASE-LIKE PROTEIN	JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF07734	PFAM	F-box associated	JGI		ISS
UniRef100_G7IM37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box protein n=1 Tax=Medicago truncatula RepID=G7IM37_MEDTR	SoyBase	E_val: 3.00E-160	ISS
UniRef100_I1L001	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L001_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g01330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g01330 not represented in the dataset	Glyma09g01330 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g01330

Paralog	Evidence	Comments
Glyma15g12190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g01330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g010600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g01330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g01330

Limit To All Plant Sequences

>Glyma09g01330.4   sequence type=transcript   gene model=Glyma09g01330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTATAATTAGAGTTATAAAGAATTTAGCACCACACTTTAACTTAAAGATACGCTGTCCAATGTCCCAAAGGCCAATTAATTGGTGAGTTGAGTTAGAGTTAGCACACGTAACATAGAGAAGATTCTCCGGGAAGAAAAGGCCAAAGTGAGGAAATTCATGGACAAGACTCTTTGTAATAACTAAAATTTTTGAAGTTTGATAGTAGTTATATGATTTTACATAACCCATGTAACACGACGAGTGAAATTGGATATGAGTGTATGAGCAAAGCCAAAGTGATCGTGTGGCAGAGCAGCGAGAGAGAAAGCTCTTCTTGTTCTGATGTCGGATCATCTTCCGCGAGAAGTGGTAACCGACATCCTCTCCCGGTTACCGGCGAAATCCCTACTCCGATTCCGGTCAACCTCAAAGTCATGGAAGTCACTAATCGACAGCCAGCACTTCAACTCGGTCCATCTCAGCAGATCCCTGAGCTTAACCTCCAACACCACCCTCATCCTCCGCCTCGACTCTGATCTATACCAGACAAATTTCCCAACCCTAGACCCTCCCCTTTTTCTTAACCACCCTCTTATGTGTTACAGCAACAACATCACTCTTCTCGGTTCCTGCAACGGACTCCTCTGTATATCCAACGTCGCCGACGACATCGCCTTTTGGAACCCCTCCCTCCGCCAGCACCGTATTCTTCCCTCTTTGCCCCTCCCCCGCCGCCGCCTCCACCCCGACACCACTCTCTTCGCCGCCCGCGTCTACGGCTTCGGCTTCGACCATACAAGTCCCGACTACAAGCTCGTCCGCATCTCTTACTTCGTCGACTTGCAGGACCGCTCCTTCGACTCCCAGGTCAAGCTCTACACGCTCCGCGCCAACGCGTGGAAGACACTCCCCAGCATGCCCTACGCTCTCTGCTGCGCGCGCACCATGGGCGTCTTCGTCGGTAACTCCCTCCACTGGGTCGTCACGCGCAAACTCGAACCCGACCAGCCCGATCTCATCGTCGCCTTCGATCTAACCCACGAGATCTTCACCGAGCTCCCCCTTCCCGACACCGGAGGAGTCGGCGGAGGGTTCGAGATCGACGTGGCACTATTAGGCGATTCCCTCTGCATGACTGTGAATTTTCACAATTCAAAAATGGATGTTTGGGTGATGAGAGAGTATAACCGTGGTGACAGCTGGTGCAAGCTGTTCACGCTGGAGGAGTCGCGTGAGTTGAGATCGTTCAAGTGCTTGAGGCCCTTGGGATACTCGAGCGATGGGAATAAGGTTCTGTTGGAACACGACCGGAAGAGGCTGTGTTGGTATGACCTGGGAAAGAAAGAGGTTACCCTTGTTAGAATTCAGGGTTTGCCTAATTTGAACGAAGCCATGATTTGTTTGGGAACTCTCGTCACACCCTATTTCTTACCTCGTCAAATTTGTCGCAAGTCGCCGACTTTAGGCTGCCAACGTCGCAGGGATGACTTCCTGTCCCAGGGTTTCAAATTGACACTATGAGGAATTCAACGAAGAAGCGGTGGTACATGGGGGTGGCTGAAACTGGCTCGGCGTGTTTGTTTAGAAGTTGATTCGAGCCAAAGGGAGGTTGAGGAAAAGATGAGTTAAATTGTTGATCAGGAGCTGGAACAGAGACACCCTTTTGCCTGTTTAGATAAGACTTTTTCCGTGTATAGTTTTTTGGACATTCTGTTTTCTTAGCGATGAAGGTGAAGAAAGGGCTGGAGTTCAGAATGTTGAAGATGAAGAAAACAATGACTGAAAAACAGATACCAAATATACAAATGCTTCTTTCCTCTCTTATTAACAGTCTCTAATTACTAAGATCCCGTAACACACCTGCTTTCTGCAATAGAAAAAAAAATGGCCTACATGGTTTTGTTGTAAAGAAGTGTTGAAGCTTGGATTGCCTCCCTGATTATGTATGTACGTTTGTTGATCCGGTTGTACCAGAGCAAATTGTAATTAAACTTTTGCAGTTAACTTGACATGTTGTTTTGGTTTATTGGTAGGTGGAATTTCCAGATTGAGTGCTGAAACTTGAAATGTTGACAAATTAACTTAACGAAAGATTTGGCACTAGGCTTTTTGTCCTTTGGATGAAACTAAGTTGAAGAAGTGCTTTCTAGTACTGGCCTTGTCCTTCGGGTACTTGTTGTTTTAGGATGTTAATCTTTTGTTGCTCAAGTGAATTTCACTAACGCTTATTTAGTGCTTGTATGTATGCTTTCACAATATGTTCAATACGATTTTTCGTGAATTTTGGTCATCTGACATAGAGAGGGTGCAGTGATTTGCATGGGAGAATTTGTTATGAAGATGCACTTAGCTTTCTGATAGTGTATTTTATTTCTAAATTCATGTCAACTTTTTATACGAAATTACCGATAGTGTATTAACGTAACGTTTTGATGTCTAGTGCCTAACCATCAATTCGTTTATGTAATGTGTGACGTTCAATTTAGAAGCTGGATGCAGTAGGCAATTGTTAGTTATTGAAATTCTTCTGAATTCCTGAATCCTCCGGGACCAAGAGGAATTTTACCTCATGGATCTATCTGAATGTATCAATGAGACACATACAGTAGT

Coding sequences of Glyma09g01330

Limit To All Plant Sequences

>Glyma09g01330.3   sequence type=CDS   gene model=Glyma09g01330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGATCATCTTCCGCGAGAAGTGGTAACCGACATCCTCTCCCGGTTACCGGCGAAATCCCTACTCCGATTCCGGTCAACCTCAAAGTCATGGAAGTCACTAATCGACAGCCAGCACTTCAACTCGGTCCATCTCAGCAGATCCCTGAGCTTAACCTCCAACACCACCCTCATCCTCCGCCTCGACTCTGATCTATACCAGACAAATTTCCCAACCCTAGACCCTCCCCTTTTTCTTAACCACCCTCTTATGTGTTACAGCAACAACATCACTCTTCTCGGTTCCTGCAACGGACTCCTCTGTATATCCAACGTCGCCGACGACATCGCCTTTTGGAACCCCTCCCTCCGCCAGCACCGTATTCTTCCCTCTTTGCCCCTCCCCCGCCGCCGCCTCCACCCCGACACCACTCTCTTCGCCGCCCGCGTCTACGGCTTCGGCTTCGACCATACAAGTCCCGACTACAAGCTCGTCCGCATCTCTTACTTCGTCGACTTGCAGGACCGCTCCTTCGACTCCCAGGTCAAGCTCTACACGCTCCGCGCCAACGCGTGGAAGACACTCCCCAGCATGCCCTACGCTCTCTGCTGCGCGCGCACCATGGGCGTCTTCGTCGGTAACTCCCTCCACTGGGTCGTCACGCGCAAACTCGAACCCGACCAGCCCGATCTCATCGTCGCCTTCGATCTAACCCACGAGATCTTCACCGAGCTCCCCCTTCCCGACACCGGAGGAGTCGGCGGAGGGTTCGAGATCGACGTGGCACTATTAGGCGATTCCCTCTGCATGACTGTGAATTTTCACAATTCAAAAATGGATGTTTGGGTGATGAGAGAGTATAACCGTGGTGACAGCTGGTGCAAGCTGTTCACGCTGGAGGAGTCGCGTGAGTTGAGATCGTTCAAGTGCTTGAGGCCCTTGGGATACTCGAGCGATGGGAATAAGGTTCTGTTGGAACACGACCGGAAGAGGCTGTGTTGGTATGACCTGGGAAAGAAAGAGGTTACCCTTGTTAGAATTCAGGGTTTGCCTAATTTGAACGAAGCCATGATTTGTTTGGGAACTCTCGTCACACCCTATTTCTTACCTCGTCAAATTTGTCGCAAGTCGCCGACTTTAGGCTGCCAACGTCGCAGGGATGACTTCCTGTCCCAGGGTTTCAAATTGACACTATGA

>Glyma09g01330.4   sequence type=CDS   gene model=Glyma09g01330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGATCATCTTCCGCGAGAAGTGGTAACCGACATCCTCTCCCGGTTACCGGCGAAATCCCTACTCCGATTCCGGTCAACCTCAAAGTCATGGAAGTCACTAATCGACAGCCAGCACTTCAACTCGGTCCATCTCAGCAGATCCCTGAGCTTAACCTCCAACACCACCCTCATCCTCCGCCTCGACTCTGATCTATACCAGACAAATTTCCCAACCCTAGACCCTCCCCTTTTTCTTAACCACCCTCTTATGTGTTACAGCAACAACATCACTCTTCTCGGTTCCTGCAACGGACTCCTCTGTATATCCAACGTCGCCGACGACATCGCCTTTTGGAACCCCTCCCTCCGCCAGCACCGTATTCTTCCCTCTTTGCCCCTCCCCCGCCGCCGCCTCCACCCCGACACCACTCTCTTCGCCGCCCGCGTCTACGGCTTCGGCTTCGACCATACAAGTCCCGACTACAAGCTCGTCCGCATCTCTTACTTCGTCGACTTGCAGGACCGCTCCTTCGACTCCCAGGTCAAGCTCTACACGCTCCGCGCCAACGCGTGGAAGACACTCCCCAGCATGCCCTACGCTCTCTGCTGCGCGCGCACCATGGGCGTCTTCGTCGGTAACTCCCTCCACTGGGTCGTCACGCGCAAACTCGAACCCGACCAGCCCGATCTCATCGTCGCCTTCGATCTAACCCACGAGATCTTCACCGAGCTCCCCCTTCCCGACACCGGAGGAGTCGGCGGAGGGTTCGAGATCGACGTGGCACTATTAGGCGATTCCCTCTGCATGACTGTGAATTTTCACAATTCAAAAATGGATGTTTGGGTGATGAGAGAGTATAACCGTGGTGACAGCTGGTGCAAGCTGTTCACGCTGGAGGAGTCGCGTGAGTTGAGATCGTTCAAGTGCTTGAGGCCCTTGGGATACTCGAGCGATGGGAATAAGGTTCTGTTGGAACACGACCGGAAGAGGCTGTGTTGGTATGACCTGGGAAAGAAAGAGGTTACCCTTGTTAGAATTCAGGGTTTGCCTAATTTGAACGAAGCCATGATTTGTTTGGGAACTCTCGTCACACCCTATTTCTTACCTCGTCAAATTTGTCGCAAGTCGCCGACTTTAGGCTGCCAACGTCGCAGGGATGACTTCCTGTCCCAGGGTTTCAAATTGACACTATGA

Predicted protein sequences of Glyma09g01330

Limit To All Plant Sequences

>Glyma09g01330.3   sequence type=predicted peptide   gene model=Glyma09g01330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDHLPREVVTDILSRLPAKSLLRFRSTSKSWKSLIDSQHFNSVHLSRSLSLTSNTTLILRLDSDLYQTNFPTLDPPLFLNHPLMCYSNNITLLGSCNGLLCISNVADDIAFWNPSLRQHRILPSLPLPRRRLHPDTTLFAARVYGFGFDHTSPDYKLVRISYFVDLQDRSFDSQVKLYTLRANAWKTLPSMPYALCCARTMGVFVGNSLHWVVTRKLEPDQPDLIVAFDLTHEIFTELPLPDTGGVGGGFEIDVALLGDSLCMTVNFHNSKMDVWVMREYNRGDSWCKLFTLEESRELRSFKCLRPLGYSSDGNKVLLEHDRKRLCWYDLGKKEVTLVRIQGLPNLNEAMICLGTLVTPYFLPRQICRKSPTLGCQRRRDDFLSQGFKLTL*

>Glyma09g01330.4   sequence type=predicted peptide   gene model=Glyma09g01330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDHLPREVVTDILSRLPAKSLLRFRSTSKSWKSLIDSQHFNSVHLSRSLSLTSNTTLILRLDSDLYQTNFPTLDPPLFLNHPLMCYSNNITLLGSCNGLLCISNVADDIAFWNPSLRQHRILPSLPLPRRRLHPDTTLFAARVYGFGFDHTSPDYKLVRISYFVDLQDRSFDSQVKLYTLRANAWKTLPSMPYALCCARTMGVFVGNSLHWVVTRKLEPDQPDLIVAFDLTHEIFTELPLPDTGGVGGGFEIDVALLGDSLCMTVNFHNSKMDVWVMREYNRGDSWCKLFTLEESRELRSFKCLRPLGYSSDGNKVLLEHDRKRLCWYDLGKKEVTLVRIQGLPNLNEAMICLGTLVTPYFLPRQICRKSPTLGCQRRRDDFLSQGFKLTL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain