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Report for Sequence Feature Glyma09g01151

Feature Type:gene_model
Chromosome:Gm09
Start:680226
stop:685310
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g01151
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25070AT Annotation by Michelle Graham. TAIR10: RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211 SoyBaseE_val: 4.00E-18ISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0009816GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction SoyBaseN/AISS
GO:0010204GO-bp Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent SoyBaseN/AISS
GO:0034051GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF05627PFAM Cleavage site for pathogenic type III effector avirulence factor Avr JGI ISS
UniRef100_G7ILR2UniRef Annotation by Michelle Graham. Most informative UniRef hit: RPM1-interacting protein n=1 Tax=Medicago truncatula RepID=G7ILR2_MEDTR SoyBaseE_val: 3.00E-69ISS
UniRef100_UPI0002337BC2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337BC2 related cluster n=1 Tax=unknown RepID=UPI0002337BC2 SoyBaseE_val: 2.00E-155ISS

Expression Patterns of Glyma09g01151
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g01151 not represented in the dataset
Glyma09g01151 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g01151
ParalogEvidenceComments
Glyma15g11965 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g01151 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g008700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g01151
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g01151
>Glyma09g01151.1   sequence type=CDS   gene model=Glyma09g01151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAACATTCTCATCACGTTCCCAAGTTTGGCAACTGGGACACTGACAACGTTCCATACACCTCATATTTTGAGAATGCACGCAGAGAAAAGTCTGGGATCATGATTAATCCTAATGACCCAATGGAAAACCCAGAGGCCTTCAACACGTGCATAAGAGTTGATGCTGATGAAGTGATGATGGCTTCTCATGGCTATTCCCACAACGTACATTCTTTGGAAAATGGAAGCCATGTGCGCCGCAGGAGCAGGGGAAGTAATGGTGAACTCACAGTCACAGCAGAGTTTGGCGCCAGTGAACAGAGTCATTTTGATCACTCTGTGAACCACAAGAGGAACATGTCCAAAGGAGGCAGTAGCATTAAGGGCTTCTCTTCGTCAAGCCATAATACACAAAGGACTGCAAACTCTTCCTTTAGTGACCACTCGAACCATCGAGCAACTGCAATACCCAAATTTGGTACTTGGGATGTCACAAACCCCAAGTCAGGAGAGGGTTATACTGCTATTTTCAGCAAAATAAAAGAAGAGAGGCAAATTAAGTCCAGCCACGTGTCCAGCATACACAGTACTCCACCACTTAACAATTCAAATATTAAGAATCAATATGGTGAATCTTCCTCCTGGTTGTCTAAGACATCAGTCAAAGTCAATAATAAGAAACGATCGGGTGTGACTTGTGAGCGTGTTACATGTGGACGGAAACGGGAACGTAGCAATGGCGCCCAAATTCAAAAATTCGAAACGACAAAAACGAGAAAGGAGGCATCCAATGCGGTCCCATCCACACAAACATCCAGTGGATAA
Predicted protein sequences of Glyma09g01151
>Glyma09g01151.1   sequence type=predicted peptide   gene model=Glyma09g01151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQHSHHVPKFGNWDTDNVPYTSYFENARREKSGIMINPNDPMENPEAFNTCIRVDADEVMMASHGYSHNVHSLENGSHVRRRSRGSNGELTVTAEFGASEQSHFDHSVNHKRNMSKGGSSIKGFSSSSHNTQRTANSSFSDHSNHRATAIPKFGTWDVTNPKSGEGYTAIFSKIKEERQIKSSHVSSIHSTPPLNNSNIKNQYGESSSWLSKTSVKVNNKKRSGVTCERVTCGRKRERSNGAQIQKFETTKTRKEASNAVPSTQTSSG*






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