Glyma09g01130 - SoyBase

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Report for Sequence Feature Glyma09g01130

Feature Type:	gene_model
Chromosome:	Gm09
Start:	670117
stop:	675204
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g01130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22260	AT	Annotation by Michelle Graham. TAIR10: Alternative oxidase family protein \| chr4:11769967-11772350 REVERSE LENGTH=351	SoyBase	E_val: 1.00E-171	ISS
GO:0007585	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory gaseous exchange	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005740	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial envelope	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009916	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alternative oxidase activity	SoyBase	N/A	ISS
PF01786	PFAM	Alternative oxidase	JGI		ISS
UniRef100_I1KZX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alternative oxidase n=1 Tax=Glycine max RepID=I1KZX1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KZX1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Alternative oxidase n=1 Tax=Glycine max RepID=I1KZX1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g01130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g01130 not represented in the dataset	Glyma09g01130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g01130

Paralog	Evidence	Comments
Glyma15g11950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g01130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g008500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g01130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g01130

Limit To All Plant Sequences

>Glyma09g01130.2   sequence type=transcript   gene model=Glyma09g01130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAAAGTAGAACGGAAAACGGAACTTGGTTGAGAAAGAAAAAACAAAAAGGATCCGAGTGCGGACGCTGGTATGAGAAATCACCGGAATTGCCGTAAATGCCGCCTATGACAACACGCTGCGAATCGACAAATCAAATGCCTCCGTGGACCACTCAGGTCCTCTTTCCCATTTCCACTCTTCAATTCAATTAATATCTCACACACACACACTCTCTCTCTCATACACACACAAAGTTCCCTCTCCAAACATGGCGGCAATTTTCTCTTCTTCGCTCTTCGTTTCTTCGCCTCTTCCCAAACCACTTTCTTCCTCCTATTCCCGAATCCATAAAGCTCCACAACTTTTCAGGGCTCGCTCCTCGCTCCTTCAGGATAAAGAGGAAAAAGTGATCGTGCAGGATTCATTCCCCTCCAAAACCTCTCCTCTTCACTCCGCTGATAAATCAACTAGTGGAAACTCGATTAACACCTCTGCGTTCGAGAAACGGATTATCAAGGTCGAACAATCGGTGAATATCTTTCTCACGGATTCCGTCATAAAGATACTTGATACTCTGTACCATGATAGACACTATGCAAGGTTTTTTGTGCTTGAAACTATTGCCAGGGTTCCTTACTTTGCCTTTATGTCAGTTCTCCATATGTATGAGAGTTTTGGCTGGTGGAGACGGGCAGACTATCTGAAAGTGCATTTTGCTGAGAGCTGGAATGAAATGCATCATTTGCTCATCATGGAAGAACTAGGGGGGAATGCTTGGTGGTTTGACCGCTTTCTCGCTCAACATATTGCAATATTTTATTATATTATGACAGTTTTAATGTATGCAGTAAGCCCAAGAATGGCATATCACTTTTCGGAATGTGTAGAGAGTCATGCATTTGAAACTTATGACAAATTTATCAAGGTCCAAGGAGATGAATTGAAAAAAATGCCAGCTCCAGAGGTTGCTGTGAATTATTATACAGGAGATGACTTGTATTTATTTGATGAATTTCAAACTTCCAGAGTTCCTAATTCAAGAAGACCTAAGATAGTTTCGATATATATAATTAATCACTAAAGTTTTTAAGTGGTTAATCATATATCACTTGTTGAACATTCTATATCATTTGTGTGGTTAATCGCTCCTGTCCTGAAGTGGAAACATTTGTACTTAAAATTGTATTCTTGTGGTTTTCCACCCCCACCCTTTATTTTGTATAATTATTTGTCTCCTGAACAAACCAATTACCTCTTTGCATTGAACCTTTTTAATGCAGTAAAGTTTCTC

Coding sequences of Glyma09g01130

Limit To All Plant Sequences

>Glyma09g01130.1   sequence type=CDS   gene model=Glyma09g01130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCAATTTTCTCTTCTTCGCTCTTCGTTTCTTCGCCTCTTCCCAAACCACTTTCTTCCTCCTATTCCCGAATCCATAAAGCTCCACAACTTTTCAGGGCTCGCTCCTCGCTCCTTCAGGATAAAGAGGAAAAAGTGATCGTGCAGGATTCATTCCCCTCCAAAACCTCTCCTCTTCACTCCGCTGATAAATCAACTAGTGGAAACTCGATTAACACCTCTGCGTTCGAGAAACGGATTATCAAGGTCGAACAATCGGTGAATATCTTTCTCACGGATTCCGTCATAAAGATACTTGATACTCTGTACCATGATAGACACTATGCAAGGTTTTTTGTGCTTGAAACTATTGCCAGGGTTCCTTACTTTGCCTTTATGTCAGTTCTCCATATGTATGAGAGTTTTGGCTGGTGGAGACGGGCAGACTATCTGAAAGTGCATTTTGCTGAGAGCTGGAATGAAATGCATCATTTGCTCATCATGGAAGAACTAGGGGGGAATGCTTGGTGGTTTGACCGCTTTCTCGCTCAACATATTGCAATATTTTATTATATTATGACAGTTTTAATGTATGCAGTAAGCCCAAGAATGGCATATCACTTTTCGGAATGTGTAGAGAGTCATGCATTTGAAACTTATGACAAATTTATCAAGGTCCAAGGAGATGAATTGAAAAAAATGCCAGCTCCAGAGGTTGCTGTGAATTATTATACAGGAGATGACTTGTATTTATTTGATGAATTTCAAACTTCCAGAGTTCCTAATTCAAGAAGACCTAAGATAGAGAATCTGTACGATGTATTTGTAAACATCAGAGATGATGAAGCTGAACATTGTAAGACAATGAAGGCTTGTCAAACCCATGGGAACCTCCGGTCACCTCATTCATATGCAGAGGATGATGACAGCTCAGTCTGTGCTCTTGAAGCAGATTGTGAAGGAATAGTAGACTGTATAAAGAAATCTGTTACTTCTAATGCAGCTAAGGTGAAGTAA

>Glyma09g01130.2   sequence type=CDS   gene model=Glyma09g01130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCAATTTTCTCTTCTTCGCTCTTCGTTTCTTCGCCTCTTCCCAAACCACTTTCTTCCTCCTATTCCCGAATCCATAAAGCTCCACAACTTTTCAGGGCTCGCTCCTCGCTCCTTCAGGATAAAGAGGAAAAAGTGATCGTGCAGGATTCATTCCCCTCCAAAACCTCTCCTCTTCACTCCGCTGATAAATCAACTAGTGGAAACTCGATTAACACCTCTGCGTTCGAGAAACGGATTATCAAGGTCGAACAATCGGTGAATATCTTTCTCACGGATTCCGTCATAAAGATACTTGATACTCTGTACCATGATAGACACTATGCAAGGTTTTTTGTGCTTGAAACTATTGCCAGGGTTCCTTACTTTGCCTTTATGTCAGTTCTCCATATGTATGAGAGTTTTGGCTGGTGGAGACGGGCAGACTATCTGAAAGTGCATTTTGCTGAGAGCTGGAATGAAATGCATCATTTGCTCATCATGGAAGAACTAGGGGGGAATGCTTGGTGGTTTGACCGCTTTCTCGCTCAACATATTGCAATATTTTATTATATTATGACAGTTTTAATGTATGCAGTAAGCCCAAGAATGGCATATCACTTTTCGGAATGTGTAGAGAGTCATGCATTTGAAACTTATGACAAATTTATCAAGGTCCAAGGAGATGAATTGAAAAAAATGCCAGCTCCAGAGGTTGCTGTGAATTATTATACAGGAGATGACTTGTATTTATTTGATGAATTTCAAACTTCCAGAGTTCCTAATTCAAGAAGACCTAAGATAGTTTCGATATATATAATTAATCACTAA

Predicted protein sequences of Glyma09g01130

Limit To All Plant Sequences

>Glyma09g01130.1   sequence type=predicted peptide   gene model=Glyma09g01130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAIFSSSLFVSSPLPKPLSSSYSRIHKAPQLFRARSSLLQDKEEKVIVQDSFPSKTSPLHSADKSTSGNSINTSAFEKRIIKVEQSVNIFLTDSVIKILDTLYHDRHYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVSPRMAYHFSECVESHAFETYDKFIKVQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVPNSRRPKIENLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSYAEDDDSSVCALEADCEGIVDCIKKSVTSNAAKVK*

>Glyma09g01130.2   sequence type=predicted peptide   gene model=Glyma09g01130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAIFSSSLFVSSPLPKPLSSSYSRIHKAPQLFRARSSLLQDKEEKVIVQDSFPSKTSPLHSADKSTSGNSINTSAFEKRIIKVEQSVNIFLTDSVIKILDTLYHDRHYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVSPRMAYHFSECVESHAFETYDKFIKVQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVPNSRRPKIVSIYIINH*

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