Glyma09g00960 - SoyBase

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Report for Sequence Feature Glyma09g00960

Feature Type:	gene_model
Chromosome:	Gm09
Start:	500525
stop:	508128
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g00960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04320	AT	Annotation by Michelle Graham. TAIR10: malonyl-CoA decarboxylase family protein \| chr4:2113565-2116525 FORWARD LENGTH=517	SoyBase	E_val: 0	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0050080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: malonyl-CoA decarboxylase activity	SoyBase	N/A	ISS
KOG3018	KOG	Malonyl-CoA decarboxylase	JGI		ISS
PTHR14153	Panther	MALONYL-COA DECARBOXYLASE	JGI		ISS
PF05292	PFAM	Malonyl-CoA decarboxylase (MCD)	JGI		ISS
UniRef100_B9RXF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Malonyl-CoA decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RXF9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KZV8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZV8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g00960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g00960

Paralog	Evidence	Comments
Glyma15g11810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g00960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g007100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g00960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g00960

Limit To All Plant Sequences

>Glyma09g00960.2   sequence type=transcript   gene model=Glyma09g00960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCACTCGCTCGGAATAAGAAGGTGGAAACATAAATAGTCGAGGTTGTTGCCAAACAACGATGTAATAAGCAGAAAGCAAAGTTGATTGACTAATACCAGTTTATTGATTTTGATTTCCGAACACACATTCTTTCAGCAAATAAAAATACGGAAATATATATATGTATAAAAAATGAACAAAAAAGCTTTGTCCATTTTGATGCGCGCCAGAATGAAGCCCAACGATCGTACAAACCTTTCTCTCTCTCCTATTCCTCTAACAAACGCGAGGAGTCAAATGCAGCAGCAGCAGCAGAATTCCCTCCCAAACGGATCGCCAGGTGATGGAAATTCAGCGCCTAATGACTCCGGCAACTCCGACAGAGAGTTTAAGAGTGTCCGCGCCTCAATGCACTCTGCCATATCAATGAACAAAACAGAAGTTTTAGATGATGTGCTTAATAACTTCTCGGAGGGTTATTTAAGCCTTTCTCGTGAAAACCGTCGCAAGTTGCTCCTTGTCCTTGCTAGAGAGTATGATCTCAATAGGTCACAAGTGCGTGAACTGATAAAGCAGTACCTTGGACTTGAACTTCCTGCTGACAAAGCTCAAGTGAGTGGCTCTGAAGACGAAGGCTTGTTTTCTTCTTTCTATCGCGTTGAGAGGAATTTGAGGCATGCCCTTCAGCCGGTTTATGAAGTTCTCTTTGAGCGTCTAAACACTCATCCTGGAGGGTTGAGGACCTTATCCATTCTTCGAGAAGATATCCTCTCTATTCTCACAGAGGAAAATATTGCATCGCTGAGAGCATTGGATTCATATTTAATGGAAAAATTTATTACGTGGCTTAGTCCTGCTGCCTTAGAGCTTCACCAGATTACATGGGATGACCCTGCTTCTTTGCTGGAGAAAATTGTTGCCTATGAAGCTGTGCACCCTATTAGCAACCTTCTAGATCTTAAGAGAAGACTGGGAATTGGCCGTCGTTGTTTTGGATATTTACATCCAGCTATTCCTGGTGAACCCCTAATTTTCATTGAAGTTGCACTACTGAAGGATGTTGCTCAGACTATACAGGAAGTTTTGTGGGATAGTCCTCCTATACCTGAAGGTGAGGCAACATGTGCCTTGTTCTACTCCATATCATCAACTCAGCCTGGCTTAGCAGGGATCAACTTGGGAAAATTTCTCATCAAACGGGTCGTAACACAGGTGAAAAGAGAGATGCCACATATTTCTACCTTTGCAACCCTAAGTCCCATCCCGGGATTCATGTCGTGGCTTTTATCCAAGTTAGCATCTCAAAGACTGCTTGCTGAAGGAGACAATTTGTCACAACCACAAGCAGAGGGATCCAGTTCCACTTTCTATGAGAATATACTTAAGCCCAAGGAAGAAGAAGCACTTATGAGTTTACCCAAGGATATTGCTACAGGAGAAAATGGAATGGATGTGATGTTCAACTTGCTTACTTCTACATCCTATAAGTGGATCCATTCACCAGAACTTCTGTCAGCATTAAAATCCCCTTTGATGCGTTTATGTGCCAGGTACCTTCTGCAAGAGAAGAAAAGAGGAAAAGCTTTGGACTCTGTAGCAAATTTTCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAACTGGATGGCAGATCGTTCAGATAAAGGTCTTTCTCAAAGTGGAGGGATCATGGTGAACTATGTGTATAGGTAATCCGTAATTGTCCTCTGGATGTTGTTCTGTTCATGCCAAAGTATATTCACAGTTATATTTATGGTGTCAATTTACTCTTTTTGCCTTTTTGGTCGTTCAGACAAATCTTAGTTGCTTTTAGATGAAAGGTTCCTCTTACCATTTTGGTTCTGGTAGTGAAGTTAGGAAATCTTACCAATGAAAGGAGCAATGGCTGTACTTGCCATTTCATGCTTTTGTGGGTTACTTGTGTTATTAATACCTCTGTATGAATGGACTAGATCAATTTTAAATTTCAGTTCACTTGATCAAATTTGAAGTATATGCTGCTGATGACACCTAATTACAGGTTGGATCACATAGAAGAATATGCCCATTCTTACTTCAGCAATGCTGAAATCCATGCCTCAAGTGCTCTCCATCACTGGGTTGATGTAACAGATACTGCTTAGTGTCAATTCAAATCTGATAGAAGATAAACTTCAACGTGTTTTAAAAAATATCATATGTGCATGTGGTTTGGAGACAAAGCTCCTTGGCAGCGGACAACCTTATTACTACTGACCCCTGCCTTTCTTTGTCTCGACCGCTTTGCTATCATTTTGCAGCCATATAGTGACAAGTAATTGTGAAGTCTGCTTGGTTGGAGCATAATGGAAGATTTTATCATAACAATAGGAGTATAGGACAAATGGATCCAAGTCTAAAACAGAGGAAGCTTATATCTTTAATTGTTCATGATTTCTGTCCATTGAACAGAAAGCAACTGATTGTGTCGCTATCCAAGAATGCCCTATAAATAGGAGTTGCATAGGAGAAAAGTTATAATGAATAGTCCATGCTTGGTAAGCCTCAAGCTGTACAATGTAATGTAATATTTGTACTTACAATACTGACAACAAACCCTATATCTTATTCTTAGTGAAGAAGGTGCTACTGCTTCTGAAATTTAGTTGTGTTGGTTGGAGATCATGAAGTGTAAACCGTAAACTACCAAATAGAAAATTGGTCCTTGAACATTGAGGATTGATGGCAATGCTTGTTGCTTGTTTCATCGTTGGACAGTATTTTCACTTTCAGATGTAAAGAAAATTGATTACACACAAATTGGTCAAAGCTGTCTTCAGAACCAAGCCTTGAAAACATTACCACTATAATTTTGGTGCTCCAAGTATCCCAAAATTATCATGGAGGGCTTAACAATATATTTTGTTCATTATCAATTTGTAACACGAACTTATCCCAACCATTTTATGATCTAACTGTTTTTTTTTTTAATCATAGCCATGCCAATACTGGAGTATAAAATTGGTCGAAAACCATGTAGACGAGTTCTTTCCTGTACATATACATTGCCCTAGCTCCTGTTCGAGCAGAGGGAATGAAGGGCTAATGCATTGCCGCAAGACTATTCACTTCTCGGTTTCAACGTGACTGGTTTCTAAGACATATTCCGTCATGAGCCTCGTGTTAGATTCAGTGACCATCTGCAAGACAATAAGGGCAGAATTAAAAACATT

Coding sequences of Glyma09g00960

Limit To All Plant Sequences

>Glyma09g00960.1   sequence type=CDS   gene model=Glyma09g00960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAAAAAGCTTTGTCCATTTTGATGCGCGCCAGAATGAAGCCCAACGATCGTACAAACCTTTCTCTCTCTCCTATTCCTCTAACAAACGCGAGGAGTCAAATGCAGCAGCAGCAGCAGAATTCCCTCCCAAACGGATCGCCAGGTGATGGAAATTCAGCGCCTAATGACTCCGGCAACTCCGACAGAGAGTTTAAGAGTGTCCGCGCCTCAATGCACTCTGCCATATCAATGAACAAAACAGAAGTTTTAGATGATGTGCTTAATAACTTCTCGGAGGGTTATTTAAGCCTTTCTCGTGAAAACCGTCGCAAGTTGCTCCTTGTCCTTGCTAGAGAGTATGATCTCAATAGGTCACAAGTGCGTGAACTGATAAAGCAGTACCTTGGACTTGAACTTCCTGCTGACAAAGCTCAAGTGAGTGGCTCTGAAGACGAAGGCTTGTTTTCTTCTTTCTATCGCGTTGAGAGGAATTTGAGGCATGCCCTTCAGCCGGTTTATGAAGTTCTCTTTGAGCGTCTAAACACTCATCCTGGAGGGTTGAGGACCTTATCCATTCTTCGAGAAGATATCCTCTCTATTCTCACAGAGGAAAATATTGCATCGCTGAGAGCATTGGATTCATATTTAATGGAAAAATTTATTACGTGGCTTAGTCCTGCTGCCTTAGAGCTTCACCAGATTACATGGGATGACCCTGCTTCTTTGCTGGAGAAAATTGTTGCCTATGAAGCTGTGCACCCTATTAGCAACCTTCTAGATCTTAAGAGAAGACTGGGAATTGGCCGTCGTTGTTTTGGATATTTACATCCAGCTATTCCTGGTGAACCCCTAATTTTCATTGAAGTTGCACTACTGAAGGATGTTGCTCAGACTATACAGGAAGTTTTGTGGGATAGTCCTCCTATACCTGAAGGTGAGGCAACATGTGCCTTGTTCTACTCCATATCATCAACTCAGCCTGGCTTAGCAGGGATCAACTTGGGAAAATTTCTCATCAAACGGGTCGTAACACAGGTGAAAAGAGAGATGCCACATATTTCTACCTTTGCAACCCTAAGTCCCATCCCGGGATTCATGTCGTGGCTTTTATCCAAGTTAGCATCTCAAAGACTGCTTGCTGAAGGAGACAATTTGTCACAACCACAAGCAGAGGGATCCAGTTCCACTTTCTATGAGAATATACTTAAGCCCAAGGAAGAAGAAGCACTTATGAGTTTACCCAAGGATATTGCTACAGGAGAAAATGGAATGGATGTGATGTTCAACTTGCTTACTTCTACATCCTATAAGTGGATCCATTCACCAGAACTTCTGTCAGCATTAAAATCCCCTTTGATGCGTTTATGTGCCAGGTACCTTCTGCAAGAGAAGAAAAGAGGAAAAGCTTTGGACTCTGTAGCAAATTTTCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAACTGGATGGCAGATCGTTCAGATAAAGGTCTTTCTCAAAGTGGAGGGATCATGGTGAACTATGTGTATAGGTTGGATCACATAGAAGAATATGCCCATTCTTACTTCAGCAATGCTGAAATCCATGCCTCAAGTGCTCTCCATCACTGGGTTGATGTAACAGATACTGCTTAG

>Glyma09g00960.2   sequence type=CDS   gene model=Glyma09g00960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAAAAAGCTTTGTCCATTTTGATGCGCGCCAGAATGAAGCCCAACGATCGTACAAACCTTTCTCTCTCTCCTATTCCTCTAACAAACGCGAGGAGTCAAATGCAGCAGCAGCAGCAGAATTCCCTCCCAAACGGATCGCCAGGTGATGGAAATTCAGCGCCTAATGACTCCGGCAACTCCGACAGAGAGTTTAAGAGTGTCCGCGCCTCAATGCACTCTGCCATATCAATGAACAAAACAGAAGTTTTAGATGATGTGCTTAATAACTTCTCGGAGGGTTATTTAAGCCTTTCTCGTGAAAACCGTCGCAAGTTGCTCCTTGTCCTTGCTAGAGAGTATGATCTCAATAGGTCACAAGTGCGTGAACTGATAAAGCAGTACCTTGGACTTGAACTTCCTGCTGACAAAGCTCAAGTGAGTGGCTCTGAAGACGAAGGCTTGTTTTCTTCTTTCTATCGCGTTGAGAGGAATTTGAGGCATGCCCTTCAGCCGGTTTATGAAGTTCTCTTTGAGCGTCTAAACACTCATCCTGGAGGGTTGAGGACCTTATCCATTCTTCGAGAAGATATCCTCTCTATTCTCACAGAGGAAAATATTGCATCGCTGAGAGCATTGGATTCATATTTAATGGAAAAATTTATTACGTGGCTTAGTCCTGCTGCCTTAGAGCTTCACCAGATTACATGGGATGACCCTGCTTCTTTGCTGGAGAAAATTGTTGCCTATGAAGCTGTGCACCCTATTAGCAACCTTCTAGATCTTAAGAGAAGACTGGGAATTGGCCGTCGTTGTTTTGGATATTTACATCCAGCTATTCCTGGTGAACCCCTAATTTTCATTGAAGTTGCACTACTGAAGGATGTTGCTCAGACTATACAGGAAGTTTTGTGGGATAGTCCTCCTATACCTGAAGGTGAGGCAACATGTGCCTTGTTCTACTCCATATCATCAACTCAGCCTGGCTTAGCAGGGATCAACTTGGGAAAATTTCTCATCAAACGGGTCGTAACACAGGTGAAAAGAGAGATGCCACATATTTCTACCTTTGCAACCCTAAGTCCCATCCCGGGATTCATGTCGTGGCTTTTATCCAAGTTAGCATCTCAAAGACTGCTTGCTGAAGGAGACAATTTGTCACAACCACAAGCAGAGGGATCCAGTTCCACTTTCTATGAGAATATACTTAAGCCCAAGGAAGAAGAAGCACTTATGAGTTTACCCAAGGATATTGCTACAGGAGAAAATGGAATGGATGTGATGTTCAACTTGCTTACTTCTACATCCTATAAGTGGATCCATTCACCAGAACTTCTGTCAGCATTAAAATCCCCTTTGATGCGTTTATGTGCCAGGTACCTTCTGCAAGAGAAGAAAAGAGGAAAAGCTTTGGACTCTGTAGCAAATTTTCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAACTGGATGGCAGATCGTTCAGATAAAGGTCTTTCTCAAAGTGGAGGGATCATGGTGAACTATGTGTATAGGTAA

Predicted protein sequences of Glyma09g00960

Limit To All Plant Sequences

>Glyma09g00960.1   sequence type=predicted peptide   gene model=Glyma09g00960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKALSILMRARMKPNDRTNLSLSPIPLTNARSQMQQQQQNSLPNGSPGDGNSAPNDSGNSDREFKSVRASMHSAISMNKTEVLDDVLNNFSEGYLSLSRENRRKLLLVLAREYDLNRSQVRELIKQYLGLELPADKAQVSGSEDEGLFSSFYRVERNLRHALQPVYEVLFERLNTHPGGLRTLSILREDILSILTEENIASLRALDSYLMEKFITWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGIGRRCFGYLHPAIPGEPLIFIEVALLKDVAQTIQEVLWDSPPIPEGEATCALFYSISSTQPGLAGINLGKFLIKRVVTQVKREMPHISTFATLSPIPGFMSWLLSKLASQRLLAEGDNLSQPQAEGSSSTFYENILKPKEEEALMSLPKDIATGENGMDVMFNLLTSTSYKWIHSPELLSALKSPLMRLCARYLLQEKKRGKALDSVANFHLQNGAMVERINWMADRSDKGLSQSGGIMVNYVYRLDHIEEYAHSYFSNAEIHASSALHHWVDVTDTA*

>Glyma09g00960.2   sequence type=predicted peptide   gene model=Glyma09g00960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKALSILMRARMKPNDRTNLSLSPIPLTNARSQMQQQQQNSLPNGSPGDGNSAPNDSGNSDREFKSVRASMHSAISMNKTEVLDDVLNNFSEGYLSLSRENRRKLLLVLAREYDLNRSQVRELIKQYLGLELPADKAQVSGSEDEGLFSSFYRVERNLRHALQPVYEVLFERLNTHPGGLRTLSILREDILSILTEENIASLRALDSYLMEKFITWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGIGRRCFGYLHPAIPGEPLIFIEVALLKDVAQTIQEVLWDSPPIPEGEATCALFYSISSTQPGLAGINLGKFLIKRVVTQVKREMPHISTFATLSPIPGFMSWLLSKLASQRLLAEGDNLSQPQAEGSSSTFYENILKPKEEEALMSLPKDIATGENGMDVMFNLLTSTSYKWIHSPELLSALKSPLMRLCARYLLQEKKRGKALDSVANFHLQNGAMVERINWMADRSDKGLSQSGGIMVNYVYR*

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