Glyma09g00660 - SoyBase

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Report for Sequence Feature Glyma09g00660

Feature Type:	gene_model
Chromosome:	Gm09
Start:	338445
stop:	342507
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g00660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11840	AT	Annotation by Michelle Graham. TAIR10: glyoxalase I homolog \| chr1:3995928-3997518 FORWARD LENGTH=322	SoyBase	E_val: 2.00E-178	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004462	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lactoylglutathione lyase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG2943	KOG	Predicted glyoxalase	JGI		ISS
PTHR10374	Panther	LACTOYLGLUTATHIONE LYASE	JGI		ISS
PTHR10374:SF0	Panther	LACTOYLGLUTATHIONE LYASE (GLYOXALASE I)	JGI		ISS
PF00903	PFAM	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	JGI		ISS
UniRef100_D2D330	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lactoylglutathione lyase n=1 Tax=Gossypium hirsutum RepID=D2D330_GOSHI	SoyBase	E_val: 0	ISS
UniRef100_I1KZT2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KZT2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g00660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g00660 not represented in the dataset	Glyma09g00660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g00660

Paralog	Evidence	Comments
Glyma15g11530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g00660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g004300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g00660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g00660

Limit To All Plant Sequences

>Glyma09g00660.2   sequence type=transcript   gene model=Glyma09g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTGGTCACCACTTGGTGTTAATTGAATTTCACTATGCGTTAAAGAAGGTTTCTGAATGTTGTTGCAGAGCATTTGCATTCCACATTGAATATGGCTGAGGCTACACAATCTAATGCTGAGTTATTGGAGTGGCCTAAGAAAGATAAGCGCCGCTTCCTGCATGTTGTGTATCGTGTTGGTGATCTTGATCGCACCATTAAGTTTTATACTGAATGTTTTGGGATGAAGCTTTTGAGGAAAAGAGATATTCCAGAAGAGAAATATGCCAATGCTTTTCTTGGATTTGGCCCTGAACAATCCCATTTTGTTGTGGAATTAACATATAATTATGGGGTGACCTCATATGATATTGGAACTGGCTTTGGACATTTTGCTATCGCAACTCCAGATGTTTACAAATTGGTTGAAGACATCCGGGCTAAGGGTGGAAATATCACCAGGGAGCCGGGTCCAGTTAAGGGTGGGAAGTCTGTTATTGCCTTCGTGAAGGATCCTGATGGTTATGCTTTTGAGCTCATTCAAAGATCTTCCACCCCTGAGCCATTGTGTCAAGTAATGCTTCGCGTTGGTGATTTAGAGCGCTCAATTAAGTTTTATGAAAAGACTTTGGGTTTGAGGGTGGTAAAGAAGACTGATAGACCTGAATACAAGTATACTATAGCTATGCTTGGGTATGCAGAGGAGCATGAGACAACTGTGTTGGAGCTGACATATAACTATGGTGTCACTGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATTGGTACTGATGATGTATACAAGAGTGCTGAGGTTGTCAACATAGTCACACAAGAGCTTGGAGGGAAGATTACTCGGCAACCAGGACCAGTTCCTGGCCTTAACACAAAGATCACTTCTTTCTTAGATCCTGATGGATGGAAAACTGTTTTGGTTGACAATCAAGATTTTCTGAAGGAGCTGGAGTAAAGAGTTCTGGCTTTTCATAGTACTAATGCTATTATATGAATAAGTGATCAGCTCGTGTTTATCAGTGAAGTAGTAGTGTTCAGTATGGTTTCTCTGATGTGTTTGCCTGTTTGGTTGAGATTCTAGACAGTCTACAGTGATATCCAACAGTACTTCAATATATTTGGTAAAAGTTGGAGAATAATTCTCATGTTTTACAGCAGAACCTTAATCAATTTAAGCCAAAATGATCCTGGACTTACTGGTCCAATAAAATTTAACTCTATCTACGACAAGTATAATTAATT

Coding sequences of Glyma09g00660

Limit To All Plant Sequences

>Glyma09g00660.1   sequence type=CDS   gene model=Glyma09g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGCTACACAATCTAATGCTGAGTTATTGGAGTGGCCTAAGAAAGATAAGCGCCGCTTCCTGCATGTTGTGTATCGTGTTGGTGATCTTGATCGCACCATTAAGTTTTATACTGAATGTTTTGGGATGAAGCTTTTGAGGAAAAGAGATATTCCAGAAGAGAAATATGCCAATGCTTTTCTTGGATTTGGCCCTGAACAATCCCATTTTGTTGTGGAATTAACATATAATTATGGGGTGACCTCATATGATATTGGAACTGGCTTTGGACATTTTGCTATCGCAACTCCAGATGTTTACAAATTGGTTGAAGACATCCGGGCTAAGGGTGGAAATATCACCAGGGAGCCGGGTCCAGTTAAGGGTGGGAAGTCTGTTATTGCCTTCGTGAAGGATCCTGATGGTTATGCTTTTGAGCTCATTCAAAGATCTTCCACCCCTGAGCCATTGTGTCAAGTAATGCTTCGCGTTGGTGATTTAGAGCGCTCAATTAAGTTTTATGAAAAGACTTTGGGTTTGAGGGTGGTAAAGAAGACTGATAGACCTGAATACAAGTATACTATAGCTATGCTTGGGTATGCAGAGGAGCATGAGACAACTGTGTTGGAGCTGACATATAACTATGGTGTCACTGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATTGGTACTGATGATGTATACAAGAGTGCTGAGGTTGTCAACATAGTCACACAAGAGCTTGGAGGGAAGATTACTCGGCAACCAGGACCAGTTCCTGGCCTTAACACAAAGATCACTTCTTTCTTAGATCCTGATGGATGGAAAACTGTTTTGGTTGACAATCAAGATTTTCTGAAGGAGCTGGAGTAA

>Glyma09g00660.2   sequence type=CDS   gene model=Glyma09g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGCTACACAATCTAATGCTGAGTTATTGGAGTGGCCTAAGAAAGATAAGCGCCGCTTCCTGCATGTTGTGTATCGTGTTGGTGATCTTGATCGCACCATTAAGTTTTATACTGAATGTTTTGGGATGAAGCTTTTGAGGAAAAGAGATATTCCAGAAGAGAAATATGCCAATGCTTTTCTTGGATTTGGCCCTGAACAATCCCATTTTGTTGTGGAATTAACATATAATTATGGGGTGACCTCATATGATATTGGAACTGGCTTTGGACATTTTGCTATCGCAACTCCAGATGTTTACAAATTGGTTGAAGACATCCGGGCTAAGGGTGGAAATATCACCAGGGAGCCGGGTCCAGTTAAGGGTGGGAAGTCTGTTATTGCCTTCGTGAAGGATCCTGATGGTTATGCTTTTGAGCTCATTCAAAGATCTTCCACCCCTGAGCCATTGTGTCAAGTAATGCTTCGCGTTGGTGATTTAGAGCGCTCAATTAAGTTTTATGAAAAGACTTTGGGTTTGAGGGTGGTAAAGAAGACTGATAGACCTGAATACAAGTATACTATAGCTATGCTTGGGTATGCAGAGGAGCATGAGACAACTGTGTTGGAGCTGACATATAACTATGGTGTCACTGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATTGGTACTGATGATGTATACAAGAGTGCTGAGGTTGTCAACATAGTCACACAAGAGCTTGGAGGGAAGATTACTCGGCAACCAGGACCAGTTCCTGGCCTTAACACAAAGATCACTTCTTTCTTAGATCCTGATGGATGGAAAACTGTTTTGGTTGACAATCAAGATTTTCTGAAGGAGCTGGAGTAA

Predicted protein sequences of Glyma09g00660

Limit To All Plant Sequences

>Glyma09g00660.1   sequence type=predicted peptide   gene model=Glyma09g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEATQSNAELLEWPKKDKRRFLHVVYRVGDLDRTIKFYTECFGMKLLRKRDIPEEKYANAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATPDVYKLVEDIRAKGGNITREPGPVKGGKSVIAFVKDPDGYAFELIQRSSTPEPLCQVMLRVGDLERSIKFYEKTLGLRVVKKTDRPEYKYTIAMLGYAEEHETTVLELTYNYGVTEYTKGNAYAQVAIGTDDVYKSAEVVNIVTQELGGKITRQPGPVPGLNTKITSFLDPDGWKTVLVDNQDFLKELE*

>Glyma09g00660.2   sequence type=predicted peptide   gene model=Glyma09g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEATQSNAELLEWPKKDKRRFLHVVYRVGDLDRTIKFYTECFGMKLLRKRDIPEEKYANAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATPDVYKLVEDIRAKGGNITREPGPVKGGKSVIAFVKDPDGYAFELIQRSSTPEPLCQVMLRVGDLERSIKFYEKTLGLRVVKKTDRPEYKYTIAMLGYAEEHETTVLELTYNYGVTEYTKGNAYAQVAIGTDDVYKSAEVVNIVTQELGGKITRQPGPVPGLNTKITSFLDPDGWKTVLVDNQDFLKELE*

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