SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71350 | AT | Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor SUI1 family protein | chr1:26888525-26891209 REVERSE LENGTH=597 | SoyBase | E_val: 0 | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| KOG2522 | KOG | Filamentous baseplate protein Ligatin, contains PUA domain | JGI | ISS | |
| PTHR12217 | Panther | LIGATIN TRANSLATION INITIATION FACTOR | JGI | ISS | |
| PTHR12217:SF4 | Panther | gb def: hypothetical orf, ydr117cp [saccharomyces cerevisiae] | JGI | ISS | |
| PF01253 | PFAM | Translation initiation factor SUI1 | JGI | ISS | |
| PF01472 | PFAM | PUA domain | JGI | ISS | |
| PF02201 | PFAM | SWIB/MDM2 domain | JGI | ISS | |
| UniRef100_G7JKR1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ligatin n=1 Tax=Medicago truncatula RepID=G7JKR1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CEB3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CEB3 related cluster n=1 Tax=unknown RepID=UPI000233CEB3 | SoyBase | E_val: 0 | ISS |
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Glyma09g00413 not represented in the dataset |
Glyma09g00413 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g37040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g001900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g00413.2 sequence type=transcript gene model=Glyma09g00413 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAACACCCCACTCGTAACTCTTACTCGTCTGCCTAGGTTACCCGTTAGTTAGAACATAAAAAGAAAAAAAGAAATAGGGAAAACTTGGCGTGTCCTCTGATACACTGAACAGAAGAGAAGTGAGTGAGAGAATGTTCAAGAAGGCGGTGGAGGCGAAATCTCACCAGAGGTTGTCTGGTGCGGACCGGAAGAAGCTGAGGCGAAGCATTAAGGACAAATTCCCAAGGGTTTCTGATTCCGATTTAGATGCCTTGCTTCCTCCCAAGAATTAAACAGGCAGAGATTACAATAGCCAAGCTTCAAAACCGTGTCCATGTTTATGCTGTGGAAGGAGGCTTTCCAATGTTTTTCGATGTTGATGGCCGCGGCTCAGACATTTTCCCTACAGTTTATGCACTGTGGATGGTCCCTGAGCTACTGCCAGTTTTCGTGCTAAAGGGTGGTGAGGTATCCCGGTTCGTTATCGGAGGAGCAGACTTGATGTTCCCTGGTATAACTGTGCCTCCCGAAGGTCTTCCTTCCTTTCGGGCTGGGGAACCTTGGGCTGTCAAAGTACCCGGAAATTCTGCTCCCATTGCAGTTGGGAGTACTACAATGAGCAGTGCTGAAGCATTAAAAGCTGGATTACGTGGAAAGGCGCTGAGAATAACTCATTACTATCGTGATTTGCTTTGGGAATCTGCCGAGGGGCATTGCGTGCCTAATGCAGGTTTTTTCGAAGATGTTGTCTTTGAGGATCCTTCTTTGTTACAAGCTTCTCATGATTCTGATTTGACTGAGGCTGTCGGTGAGACATCAATTGATCAGCACAACAACCCAAAAGGTGATGGACCGGAGGAATCTCTAGATGTAAATGAGTTCCAACCTGATTCTAACCCTGCATTGACGATGCCAAATGGTAATGAAAATGATACCGCTGCTGAAGTAACTGAAGGCGTGGCTGATTTGAATTTACGGGATACTGCCTCTGCTAATGACCCAGATGACCAACAGACTCTATCAACTGCAGACGTTAATTCCCTGTTAGATAAGTGCCTTCTTCAAGCTTTGCACACAACGGTGAAGGACAAAGACCTTCCCTTGCCTGGAAGCACTCTATGGTCAAACCATGTATTGCCGTGTAGGCCTTCAGGAATCACTTTAGACATCAAAAAATCTTCCTACAAAAAGTTATCAAAGTGGTTACAAGCAAAATCCACCTCTGGCTTGATATCAGTGAAAGAAGATAAACACAAAAAGGAAGTAATGCTATTTTCAGTAAACCGAAAACATGCTGATTATTCATCCTTTAAGCCTGAAAAAAGGCAAGTGGAGAAAAGTGAGCAACCCAGTGTTCAGTCTGCCAATGAAATTCGTTCATCCAAAACTCTTGAAGTGGCTGAAATCTACAAACCAAGTGTACATGTCAATTCCATATTTTCATCTGTAGGAGCTGACACAGGGAAACTTTTTAGTGCTTCTGAAGCTACTGATATTGTCTTCAAATATGTTGAAAAAGAAAATCTTGTGAAACCAACAAATAAATCCGTTGTGGTTCTTGATGTAATATTATGTGATGCACTGTTCAAGGGGGCTATTAAAAAAGGAACAACATATCCTACAGAAATTCACAAGAAGGATTTAGGATCAACATTTGTGAGCCGTATGCAACCTCATCATGTTGTGACAAGAGGGAATGAATCTGTTGTTTGTAAAGGTGCCCTTAAAACAATTCAGTTATTGACAGAACGTCGGCAAGGCAACAAGAAGGTAACCAAACTCTCTGGTATGGAATCTTTTCTTATAGATGCTGAAGCATTGGCATCAGAACTGCAGAAGAAGTTTGCTTGCAGTACCACTGTTGCAGAACTACCAGGTAAGAAAGGGAATGAAGTTTTGGTTCAAGGAGGAGTCATCGATGATTTAGCTAGGCATTTGATTGATCAATATGGAGTTCCAAAGAGATACATTGAAGTTCTTGATAAAACCAAGAAATGAGCTACATACAATTTTATTTTATTTTTTTATGTAACGCTGATGGGAGTGCTTTACTTAGATGCCGAGAGATGTGTATGTTCTGTACTTTTCGTACACTGGTTTATTGTTGGGTTGAGGTGAATACAAAAGGAGCGCGATAAGAATATAAATGGACAAAGCACAAATGCTCTTTTCAATTCAAAGAATTGTTGTGTCAAGTTTATTGTTATACTCTGAATGGAGGAAGTCACCATTCAGATCAAACAAACTTGATCAGTTGAGGCAGCATTCACAATTTTTTCACTATATGAAAGCAATAGTCTAAACTCTCCCTTTAATCTTTGAGATTGCAAGTGCCAGATACTGTTTCTTTATAAAACCTTCACTTTAG
>Glyma09g00413.1 sequence type=CDS gene model=Glyma09g00413 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCAAGAAGGCGGTGGAGGCGAAATCTCACCAGAGGTTGTCTGGTGCGGACCGGAAGAAGCTGAGGCGAAGCATTAAGGACAAATTCCCAAGGGTTTCTGATTCCGATTTAGATGCCTTGCTTCCTCCCAAGGCAGAGATTACAATAGCCAAGCTTCAAAACCGTGTCCATGTTTATGCTGTGGAAGGAGGCTTTCCAATGTTTTTCGATGTTGATGGCCGCGGCTCAGACATTTTCCCTACAGTTTATGCACTGTGGATGGTCCCTGAGCTACTGCCAGTTTTCGTGCTAAAGGGTGGTGAGGTATCCCGGTTCGTTATCGGAGGAGCAGACTTGATGTTCCCTGGTATAACTGTGCCTCCCGAAGGTCTTCCTTCCTTTCGGGCTGGGGAACCTTGGGCTGTCAAAGTACCCGGAAATTCTGCTCCCATTGCAGTTGGGAGTACTACAATGAGCAGTGCTGAAGCATTAAAAGCTGGATTACGTGGAAAGGCGCTGAGAATAACTCATTACTATCGTGATTTGCTTTGGGAATCTGCCGAGGGGCATTGCGTGCCTAATGCAGGTTTTTTCGAAGATGTTGTCTTTGAGGATCCTTCTTTGTTACAAGCTTCTCATGATTCTGATTTGACTGAGGCTGTCGGTGAGACATCAATTGATCAGCACAACAACCCAAAAGGTGATGGACCGGAGGAATCTCTAGATGTAAATGAGTTCCAACCTGATTCTAACCCTGCATTGACGATGCCAAATGGTAATGAAAATGATACCGCTGCTGAAGTAACTGAAGGCGTGGCTGATTTGAATTTACGGGATACTGCCTCTGCTAATGACCCAGATGACCAACAGACTCTATCAACTGCAGACGTTAATTCCCTGTTAGATAAGTGCCTTCTTCAAGCTTTGCACACAACGGTGAAGGACAAAGACCTTCCCTTGCCTGGAAGCACTCTATGGTCAAACCATGTATTGCCGTGTAGGCCTTCAGGAATCACTTTAGACATCAAAAAATCTTCCTACAAAAAGTTATCAAAGTGGTTACAAGCAAAATCCACCTCTGGCTTGATATCAGTGAAAGAAGATAAACACAAAAAGGAAGTAATGCTATTTTCAGTAAACCGAAAACATGCTGATTATTCATCCTTTAAGCCTGAAAAAAGGCAAGTGGAGAAAAGTGAGCAACCCAGTGTTCAGTCTGCCAATGAAATTCGTTCATCCAAAACTCTTGAAGTGGCTGAAATCTACAAACCAAGTGTACATGTCAATTCCATATTTTCATCTGTAGGAGCTGACACAGGGAAACTTTTTAGTGCTTCTGAAGCTACTGATATTGTCTTCAAATATGTTGAAAAAGAAAATCTTGTGAAACCAACAAATAAATCCGTTGTGGTTCTTGATGTAATATTATGTGATGCACTGTTCAAGGGGGCTATTAAAAAAGGAACAACATATCCTACAGAAATTCACAAGAAGGATTTAGGATCAACATTTGTGAGCCGTATGCAACCTCATCATGTTGTGACAAGAGGGAATGAATCTGTTGTTTGTAAAGGTGCCCTTAAAACAATTCAGTTATTGACAGAACGTCGGCAAGGCAACAAGAAGGTAACCAAACTCTCTGGTATGGAATCTTTTCTTATAGATGCTGAAGCATTGGCATCAGAACTGCAGAAGAAGTTTGCTTGCAGTACCACTGTTGCAGAACTACCAGGTAAGAAAGGGAATGAAGTTTTGGTTCAAGGAGGAGTCATCGATGATTTAGCTAGGCATTTGATTGATCAATATGGAGTTCCAAAGAGATACATTGAAGTTCTTGATAAAACCAAGAAATGA >Glyma09g00413.2 sequence type=CDS gene model=Glyma09g00413 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTGCTTCCTCCCAAGAATTAAACAGGCAGAGATTACAATAGCCAAGCTTCAAAACCGTGTCCATGTTTATGCTGTGGAAGGAGGCTTTCCAATGTTTTTCGATGTTGATGGCCGCGGCTCAGACATTTTCCCTACAGTTTATGCACTGTGGATGGTCCCTGAGCTACTGCCAGTTTTCGTGCTAAAGGGTGGTGAGGTATCCCGGTTCGTTATCGGAGGAGCAGACTTGATGTTCCCTGGTATAACTGTGCCTCCCGAAGGTCTTCCTTCCTTTCGGGCTGGGGAACCTTGGGCTGTCAAAGTACCCGGAAATTCTGCTCCCATTGCAGTTGGGAGTACTACAATGAGCAGTGCTGAAGCATTAAAAGCTGGATTACGTGGAAAGGCGCTGAGAATAACTCATTACTATCGTGATTTGCTTTGGGAATCTGCCGAGGGGCATTGCGTGCCTAATGCAGGTTTTTTCGAAGATGTTGTCTTTGAGGATCCTTCTTTGTTACAAGCTTCTCATGATTCTGATTTGACTGAGGCTGTCGGTGAGACATCAATTGATCAGCACAACAACCCAAAAGGTGATGGACCGGAGGAATCTCTAGATGTAAATGAGTTCCAACCTGATTCTAACCCTGCATTGACGATGCCAAATGGTAATGAAAATGATACCGCTGCTGAAGTAACTGAAGGCGTGGCTGATTTGAATTTACGGGATACTGCCTCTGCTAATGACCCAGATGACCAACAGACTCTATCAACTGCAGACGTTAATTCCCTGTTAGATAAGTGCCTTCTTCAAGCTTTGCACACAACGGTGAAGGACAAAGACCTTCCCTTGCCTGGAAGCACTCTATGGTCAAACCATGTATTGCCGTGTAGGCCTTCAGGAATCACTTTAGACATCAAAAAATCTTCCTACAAAAAGTTATCAAAGTGGTTACAAGCAAAATCCACCTCTGGCTTGATATCAGTGAAAGAAGATAAACACAAAAAGGAAGTAATGCTATTTTCAGTAAACCGAAAACATGCTGATTATTCATCCTTTAAGCCTGAAAAAAGGCAAGTGGAGAAAAGTGAGCAACCCAGTGTTCAGTCTGCCAATGAAATTCGTTCATCCAAAACTCTTGAAGTGGCTGAAATCTACAAACCAAGTGTACATGTCAATTCCATATTTTCATCTGTAGGAGCTGACACAGGGAAACTTTTTAGTGCTTCTGAAGCTACTGATATTGTCTTCAAATATGTTGAAAAAGAAAATCTTGTGAAACCAACAAATAAATCCGTTGTGGTTCTTGATGTAATATTATGTGATGCACTGTTCAAGGGGGCTATTAAAAAAGGAACAACATATCCTACAGAAATTCACAAGAAGGATTTAGGATCAACATTTGTGAGCCGTATGCAACCTCATCATGTTGTGACAAGAGGGAATGAATCTGTTGTTTGTAAAGGTGCCCTTAAAACAATTCAGTTATTGACAGAACGTCGGCAAGGCAACAAGAAGGTAACCAAACTCTCTGGTATGGAATCTTTTCTTATAGATGCTGAAGCATTGGCATCAGAACTGCAGAAGAAGTTTGCTTGCAGTACCACTGTTGCAGAACTACCAGGTAAGAAAGGGAATGAAGTTTTGGTTCAAGGAGGAGTCATCGATGATTTAGCTAGGCATTTGATTGATCAATATGGAGTTCCAAAGAGATACATTGAAGTTCTTGATAAAACCAAGAAATGA
>Glyma09g00413.1 sequence type=predicted peptide gene model=Glyma09g00413 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFKKAVEAKSHQRLSGADRKKLRRSIKDKFPRVSDSDLDALLPPKAEITIAKLQNRVHVYAVEGGFPMFFDVDGRGSDIFPTVYALWMVPELLPVFVLKGGEVSRFVIGGADLMFPGITVPPEGLPSFRAGEPWAVKVPGNSAPIAVGSTTMSSAEALKAGLRGKALRITHYYRDLLWESAEGHCVPNAGFFEDVVFEDPSLLQASHDSDLTEAVGETSIDQHNNPKGDGPEESLDVNEFQPDSNPALTMPNGNENDTAAEVTEGVADLNLRDTASANDPDDQQTLSTADVNSLLDKCLLQALHTTVKDKDLPLPGSTLWSNHVLPCRPSGITLDIKKSSYKKLSKWLQAKSTSGLISVKEDKHKKEVMLFSVNRKHADYSSFKPEKRQVEKSEQPSVQSANEIRSSKTLEVAEIYKPSVHVNSIFSSVGADTGKLFSASEATDIVFKYVEKENLVKPTNKSVVVLDVILCDALFKGAIKKGTTYPTEIHKKDLGSTFVSRMQPHHVVTRGNESVVCKGALKTIQLLTERRQGNKKVTKLSGMESFLIDAEALASELQKKFACSTTVAELPGKKGNEVLVQGGVIDDLARHLIDQYGVPKRYIEVLDKTKK* >Glyma09g00413.2 sequence type=predicted peptide gene model=Glyma09g00413 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPCFLPRIKQAEITIAKLQNRVHVYAVEGGFPMFFDVDGRGSDIFPTVYALWMVPELLPVFVLKGGEVSRFVIGGADLMFPGITVPPEGLPSFRAGEPWAVKVPGNSAPIAVGSTTMSSAEALKAGLRGKALRITHYYRDLLWESAEGHCVPNAGFFEDVVFEDPSLLQASHDSDLTEAVGETSIDQHNNPKGDGPEESLDVNEFQPDSNPALTMPNGNENDTAAEVTEGVADLNLRDTASANDPDDQQTLSTADVNSLLDKCLLQALHTTVKDKDLPLPGSTLWSNHVLPCRPSGITLDIKKSSYKKLSKWLQAKSTSGLISVKEDKHKKEVMLFSVNRKHADYSSFKPEKRQVEKSEQPSVQSANEIRSSKTLEVAEIYKPSVHVNSIFSSVGADTGKLFSASEATDIVFKYVEKENLVKPTNKSVVVLDVILCDALFKGAIKKGTTYPTEIHKKDLGSTFVSRMQPHHVVTRGNESVVCKGALKTIQLLTERRQGNKKVTKLSGMESFLIDAEALASELQKKFACSTTVAELPGKKGNEVLVQGGVIDDLARHLIDQYGVPKRYIEVLDKTKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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