SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16040 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580); Has 280 Blast hits to 280 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 111; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:5504747-5506 | SoyBase | E_val: 2.00E-71 | ISS |
| GO:0006506 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR15095 | Panther | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS, CLASS F | JGI | ISS | |
| PF06699 | PFAM | GPI biosynthesis protein family Pig-F | JGI | ISS | |
| UniRef100_I1KZQ1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZQ1_SOYBN | SoyBase | E_val: 6.00E-169 | ISS |
| UniRef100_Q9S9N0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: T24D18.15 protein n=1 Tax=Arabidopsis thaliana RepID=Q9S9N0_ARATH | SoyBase | E_val: 2.00E-67 | ISS |
|
Glyma09g00300 not represented in the dataset |
Glyma09g00300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g000900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g00300.1 sequence type=CDS gene model=Glyma09g00300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCGCCGGAAAAGCAACGAGACAACGAAGTCGTCGACAACCTCAACCGTGGAATTGCCACCACCAATCTCAGCCTCAGAAGCCCTTATAGTCAACGCATTATGCGCGCTTGGCTTGGCCTTCGCCTTCTGGATTGCGAACACTGTCTACTCCATCGAACTCGTTACTCATCCTTCTCTCACACTCTTCTTCATCTGGATTACAGAGCTCCCCATTGTGACCCTTCTATACAGTCGATATCGACAAAATCGGAAGCAATGCACGTACCTGCGAGCTGTTGGGAGAGGGGTTCTAGGAGTGCCTGTTGGGGCACTACTGAATTTTTTAGGAGCTATTGCTGTGGGGGCGCCTGTTACATTTCAGTATCTTCCCAAGACTGTAAATTGGGCTCTTATGATGTCTGTGTTCACAACAATTCCAGCGTCATGTGTTCTTGGTTCATCGTGGGCTGACTGGCGACGTATATTTGCACAAACAAAGCCAAAAGGATCTATAGAGTACCTGATTTGTTTACCAGCACATGGAGCAGTTATTGGAGCATGGTTTGGGGCTTGGCCAATGCCTCTTGACTGGGAGAGGCCATGGCAGGAATGGCCCATTTCTGTGAGCTATGGGACCGTAGCTGGTTACCTGGTGGCATTGGTTGCATCATTGGGCTTTGTTCTTGCTTGTGGTAGATCACAACATATCAAAAGAGAATGA
>Glyma09g00300.1 sequence type=predicted peptide gene model=Glyma09g00300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRRKSNETTKSSTTSTVELPPPISASEALIVNALCALGLAFAFWIANTVYSIELVTHPSLTLFFIWITELPIVTLLYSRYRQNRKQCTYLRAVGRGVLGVPVGALLNFLGAIAVGAPVTFQYLPKTVNWALMMSVFTTIPASCVLGSSWADWRRIFAQTKPKGSIEYLICLPAHGAVIGAWFGAWPMPLDWERPWQEWPISVSYGTVAGYLVALVASLGFVLACGRSQHIKRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
