Glyma09G34250 - SoyBase

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Report for Sequence Feature Glyma09G34250

Feature Type:	gene_model
Chromosome:	Gm09
Start:	40682192
stop:	40685783
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09G34250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16070	AT	Annotation by Michelle Graham. TAIR10: Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 \| chr4:9096808-9100596 REVERSE LENGTH=654	SoyBase	E_val: 8.00E-76	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0016042	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid catabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
PTHR21493	Panther	CGI-141-RELATED/LIPASE CONTAINING PROTEIN	JGI		ISS
PTHR21493:SF2	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01764	PFAM	Lipase (class 3)	JGI		ISS
UniRef100_D7MA87	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipase class 3 family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MA87_ARALL	SoyBase	E_val: 6.00E-74	ISS
UniRef100_I1L522	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L522_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma09G34250

Locus	Gene Symbol	Protein Name
	DAGL	Diacylglycerol lipase

Expression Patterns of Glyma09G34250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09G34250 not represented in the dataset	Glyma09G34250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09G34250

Paralog	Evidence	Comments
Glyma01g01510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09G34250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g209400	Wm82.a2.v1	IGC	As supplied by JGI
Glyma09g34250	Wm82.a1.v1.1	IGC	Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

References for Glyma09G34250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09G34250

Limit To All Plant Sequences

>Glyma09g34250.4   sequence type=transcript   gene model=Glyma09g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGCCCTCTTGTTTTATTTTATTTTCTATCTCTCTGGAAATTGTAAGTAAATTCATATGTACCAATTATCTTGTATTTCTCATTCTTAATTTGCACGATGAAGTCAACTCAGACCAAGTAAAACCAAGCTTTTCTCCATCGTTTTCCTATATAAGATCACAGTCTCCTTGGAGCTCAAGACACCAACGTCAACGAAATATTCTATATATCTACTTTCTTTCTTCCATTTAATTTCCCGATCGAGCTTCCTTCTTGTTCGCAATTAATGGCTAGTAAGATTGAAAAGAAAGCCCCGAGGGTTGAACGGAGGCATATTGAGGCGCCCAAAAATTTGATGGAGGTAGTCTTCATATTAGTCGATGCCATAACGTCGCTTGGTTACACCGAGAGACGGCAAGTCTCCAACTTGCCCAGAGCCATCGCTTCCGCTGTGTTGGACAAGGGTAAGAAAACAGTTGCAAGAGAATGCGGTGAAAGAAGTGATTGTGTACAACTCAAGTCCCCCGAAGTTATAAAGGAGTTATATGAGATAAAGAAATTGCTGACACGGACCATGCTTTTCAGCAGCAGAAAACGGTTTCTTGGGTTTTTGTTTGCTGCTGGATTCGACCAGAAGGATGTCCTCCTAAGAAAGAGAACAGCTCGGATTCTAAGGCCCGCTTTCACAGTGATACGTGATATAGAATCAAAAAGTTTGCTGGTGTTTATTCGGGGAACTCGTAGCCTAAAAGACACGCTTACAGATGCACTTTGTGCTCCCGTATCCTTCGAGCATAACAATATGGTTTCAGGACATGCACACCGTGGTATGGTTGCTGCAGCTTCTTGGATTCTAAAGCACTGCACTCCTGTACTACTTAATGCTCTTCATCAATATCCACACTTCAAAATCAAGGGTCGCGATCGGAATAATGATCAAATCATTCCAATTGCCAAAGCCATTGCAAAACATGCAGTAACCCACTGCACCGAGGGTGTGAAGAAGTACCAACACAGAACTCACGCGTTGCTTCCATGGCACCGACGTGAGAATAAATTAGATAACATGGCTGAATTAGCTTCTGGATCATCTCATGAGACAAATTTTGAATCTCTCTTGACTGAAGAGCAATTAATCATGGAGTCTATGTCAGATGATGAGGAATATAATTCTTCTAGTGAAGGATCTGATGTTGATGACGACGAAGATCAATTGTGGAATCAAGTGGGGAAGCTTAAACTAGGAAAAGAAGCAGCCACAACCAAAAACATAGCTGGAGAAGAGAGTGATTGTCGAGTCAACGTCAGGTAGACGTCATCTTTATCCTCCAGGAAGGATCATGCATATAGTCCCTACTGCACATTTGTCTGAAAATATTCCTAATTCAAACCACAATGGTTCTGATGAGAAACATGTCTACCTATATGAAACGCCTAGAGATCTGTATGGAAAGCTCAGACTTTCTAGAGGGATGATACTTGATCATATGACGAACCAGTATCTGAAGATGTTACAACAATTAATCAATCAACTAGAGAAAGACAGCTTCAAATATCGTGGTGGATGAGCCAAGGAATAGCAGATGAAAAAATAATTGGTACTAATTGGATCATGGAGCTAGCCCTAAAGAATTAAAATTGGACCTCTTGGTTCTGATTTTTGAGATTGTTGTGTGTATATTAGGATTGTAATTGTTGAATGGATCACATAGGTTTTTAGGAGTGTCTTCAGAATTTAGGATGATGTTAATTGTGCTAAGCATAAGGGGTGTATTTGTTGCTTCTGGGCTCTCTATTAAAATAAAATTTTTAAAAGAATTTATGACAAAATAATTTTGTTTTGTCTTTCATGCTTTGCTAAGG

Coding sequences of Glyma09G34250

Limit To All Plant Sequences

>Glyma09g34250.3   sequence type=CDS   gene model=Glyma09g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGTAAGATTGAAAAGAAAGCCCCGAGGGTTGAACGGAGGCATATTGAGGCGCCCAAAAATTTGATGGAGGTAGTCTTCATATTAGTCGATGCCATAACGTCGCTTGGTTACACCGAGAGACGGCAAGTCTCCAACTTGCCCAGAGCCATCGCTTCCGCTGTGTTGGACAAGGGTAAGAAAACAGTTGCAAGAGAATGCGGTGAAAGAAGTGATTGTGTACAACTCAAGTCCCCCGAAGTTATAAAGGAGTTATATGAGATAAAGAAATTGCTGACACGGACCATGCTTTTCAGCAGCAGAAAACGGTTTCTTGGGTTTTTGTTTGCTGCTGGATTCGACCAGAAGGATGTCCTCCTAAGAAAGAGAACAGCTCGGATTCTAAGGCCCGCTTTCACAGTGATACGTGATATAGAATCAAAAAGTTTGCTGGTGTTTATTCGGGGAACTCGTAGCCTAAAAGACACGCTTACAGATGCACTTTGTGCTCCCGTATCCTTCGAGCATAACAATATGGTTTCAGGACATGCACACCGTGGTATGGTTGCTGCAGCTTCTTGGATTCTAAAGCACTGCACTCCTGTACTACTTAATGCTCTTCATCAATATCCACACTTCAAAATCAAGATTGTTGGGCACTCGCTTGGGGGTGGTACTGCTGCACTGCTGACATATAAGCTTAGAGAAATGCAACAATTCTCTTCAAGCACTTGTGTCACGTTTGGCCCAGCTGCCTGCATGACATTAGAGTTAGCCGAATTTGGGAAGCCATTTATCATTTCCATTATAAATGGTTATGACATAGTGCCTACATTGTCAGCTTCTTCTGTTCATGATTTCGTTTCTGAGGGTCGCGATCGGAATAATGATCAAATCATTCCAATTGCCAAAGCCATTGCAAAACATGCAGTAACCCACTGCACCGAGGGTGTGAAGAAGTACCAACACAGAACTCACGCGTTGCTTCCATGGCACCGACGTGAGAATAAATTAGATAACATGGCTGAATTAGCTTCTGGATCATCTCATGAGACAAATTTTGAATCTCTCTTGACTGAAGAGCAATTAATCATGGAGTCTATGTCAGATGATGAGGAATATAATTCTTCTAGTGAAGGATCTGATGTTGATGACGACGAAGATCAATTGTGGAATCAAGTGGGGAAGCTTAAACTAGGAAAAGAAGCAGCCACAACCAAAAACATAGCTGGAGAAGAGAGTGATTGTCGAGTCAACGTCAGGTAG

>Glyma09g34250.4   sequence type=CDS   gene model=Glyma09g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGTAAGATTGAAAAGAAAGCCCCGAGGGTTGAACGGAGGCATATTGAGGCGCCCAAAAATTTGATGGAGGTAGTCTTCATATTAGTCGATGCCATAACGTCGCTTGGTTACACCGAGAGACGGCAAGTCTCCAACTTGCCCAGAGCCATCGCTTCCGCTGTGTTGGACAAGGGTAAGAAAACAGTTGCAAGAGAATGCGGTGAAAGAAGTGATTGTGTACAACTCAAGTCCCCCGAAGTTATAAAGGAGTTATATGAGATAAAGAAATTGCTGACACGGACCATGCTTTTCAGCAGCAGAAAACGGTTTCTTGGGTTTTTGTTTGCTGCTGGATTCGACCAGAAGGATGTCCTCCTAAGAAAGAGAACAGCTCGGATTCTAAGGCCCGCTTTCACAGTGATACGTGATATAGAATCAAAAAGTTTGCTGGTGTTTATTCGGGGAACTCGTAGCCTAAAAGACACGCTTACAGATGCACTTTGTGCTCCCGTATCCTTCGAGCATAACAATATGGTTTCAGGACATGCACACCGTGGTATGGTTGCTGCAGCTTCTTGGATTCTAAAGCACTGCACTCCTGTACTACTTAATGCTCTTCATCAATATCCACACTTCAAAATCAAGGGTCGCGATCGGAATAATGATCAAATCATTCCAATTGCCAAAGCCATTGCAAAACATGCAGTAACCCACTGCACCGAGGGTGTGAAGAAGTACCAACACAGAACTCACGCGTTGCTTCCATGGCACCGACGTGAGAATAAATTAGATAACATGGCTGAATTAGCTTCTGGATCATCTCATGAGACAAATTTTGAATCTCTCTTGACTGAAGAGCAATTAATCATGGAGTCTATGTCAGATGATGAGGAATATAATTCTTCTAGTGAAGGATCTGATGTTGATGACGACGAAGATCAATTGTGGAATCAAGTGGGGAAGCTTAAACTAGGAAAAGAAGCAGCCACAACCAAAAACATAGCTGGAGAAGAGAGTGATTGTCGAGTCAACGTCAGGTAG

Predicted protein sequences of Glyma09G34250

Limit To All Plant Sequences

>Glyma09g34250.3   sequence type=predicted peptide   gene model=Glyma09g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKIEKKAPRVERRHIEAPKNLMEVVFILVDAITSLGYTERRQVSNLPRAIASAVLDKGKKTVARECGERSDCVQLKSPEVIKELYEIKKLLTRTMLFSSRKRFLGFLFAAGFDQKDVLLRKRTARILRPAFTVIRDIESKSLLVFIRGTRSLKDTLTDALCAPVSFEHNNMVSGHAHRGMVAAASWILKHCTPVLLNALHQYPHFKIKIVGHSLGGGTAALLTYKLREMQQFSSSTCVTFGPAACMTLELAEFGKPFIISIINGYDIVPTLSASSVHDFVSEGRDRNNDQIIPIAKAIAKHAVTHCTEGVKKYQHRTHALLPWHRRENKLDNMAELASGSSHETNFESLLTEEQLIMESMSDDEEYNSSSEGSDVDDDEDQLWNQVGKLKLGKEAATTKNIAGEESDCRVNVR*

>Glyma09g34250.4   sequence type=predicted peptide   gene model=Glyma09g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKIEKKAPRVERRHIEAPKNLMEVVFILVDAITSLGYTERRQVSNLPRAIASAVLDKGKKTVARECGERSDCVQLKSPEVIKELYEIKKLLTRTMLFSSRKRFLGFLFAAGFDQKDVLLRKRTARILRPAFTVIRDIESKSLLVFIRGTRSLKDTLTDALCAPVSFEHNNMVSGHAHRGMVAAASWILKHCTPVLLNALHQYPHFKIKGRDRNNDQIIPIAKAIAKHAVTHCTEGVKKYQHRTHALLPWHRRENKLDNMAELASGSSHETNFESLLTEEQLIMESMSDDEEYNSSSEGSDVDDDEDQLWNQVGKLKLGKEAATTKNIAGEESDCRVNVR*

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