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Report for Sequence Feature Glyma08g48290

Feature Type:gene_model
Chromosome:Gm08
Start:46932355
stop:46934012
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g48290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61570AT Annotation by Michelle Graham. TAIR10: translocase of the inner mitochondrial membrane 13 | chr1:22718897-22719473 REVERSE LENGTH=87 SoyBaseE_val: 1.00E-22ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0045039GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into mitochondrial inner membrane SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005743GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane SoyBaseN/AISS
GO:0005758GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial intermembrane space SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0015450GO-mf Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity SoyBaseN/AISS
KOG1733 KOG Mitochondrial import inner membrane translocase, subunit TIM13 JGI ISS
PTHR19338Panther TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG JGI ISS
PF02953PFAM Tim10/DDP family zinc finger JGI ISS
UniRef100_C6TNN4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TNN4_SOYBN SoyBaseE_val: 3.00E-54ISS
UniRef100_G7J7C6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit Tim13 n=1 Tax=Medicago truncatula RepID=G7J7C6_MEDTR SoyBaseE_val: 2.00E-34ISS

Expression Patterns of Glyma08g48290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g48290 not represented in the dataset
Glyma08g48290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g48290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g367400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g48290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g48290
>Glyma08g48290.1   sequence type=CDS   gene model=Glyma08g48290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGTTCTCAAATCAATCGAGAGGGTCGTCGAGCCAATTATCTGCTCAGGATCTCAAAAACCAGTTGAAGAACCAACTTGCCATTGAGTATGCTCAACAATTTCTTGAGACAGTGGGAAGAAAGTGTTTTGAGAAGTGTGTTACAAAACCAGGTTCAAGCCTCGGTGGGAGTGAAAGCAGTTGCATCTCTAGGTGCGTAGATCGATATATTGAAGCCACAGGCATAATTAGCAAAGCGTTATTTAGTTCACAATGA
Predicted protein sequences of Glyma08g48290
>Glyma08g48290.1   sequence type=predicted peptide   gene model=Glyma08g48290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSFSNQSRGSSSQLSAQDLKNQLKNQLAIEYAQQFLETVGRKCFEKCVTKPGSSLGGSESSCISRCVDRYIEATGIISKALFSSQ*






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