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Report for Sequence Feature Glyma08g48281

Feature Type:gene_model
Chromosome:Gm08
Start:46925776
stop:46926877
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g48281
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39060AT Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein | chr2:16306818-16308206 REVERSE LENGTH=258 SoyBaseE_val: 5.00E-63ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005887GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0051119GO-mf Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity SoyBaseN/AISS
KOG1623 KOG Multitransmembrane protein JGI ISS
PTHR10791Panther STROMAL CELL PROTEIN/NODULIN MTN3-RELATED JGI ISS
PTHR10791:SF6Panther gb def: agcp6169 [anopheles gambiae str. pest] JGI ISS
PF03083PFAM MtN3/saliva family JGI ISS
UniRef100_G7K8I6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein RUPTURED POLLEN GRAIN n=1 Tax=Medicago truncatula RepID=G7K8I6_MEDTR SoyBaseE_val: 2.00E-80ISS
UniRef100_UPI0002337F4FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337F4F related cluster n=1 Tax=unknown RepID=UPI0002337F4F SoyBaseE_val: 1.00E-158ISS

Expression Patterns of Glyma08g48281
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g48281 not represented in the dataset
Glyma08g48281 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g48281
ParalogEvidenceComments
Glyma18g53250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g48281 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g48281
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g48281
>Glyma08g48281.1   sequence type=CDS   gene model=Glyma08g48281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATCAATTCCATATGTGGTCGCACTTCTTAGCGCACTGTTGCTTCTATATTATGGCTTCATAAAGACCAATGCTACTTTGATTATCACCATCAACTGTATTGGATGTGTTATAGAAGTTTCATACCTATCAATGTGCATTATATATGCTCCCAGGAAACAGAAGATATCCACTTTGGTAATGATACTCATTGCCGACATTGGAGGTTTGGCCTTAACCATGTTAATCATCATCACCTTTGCTGTGAAGGCCATCAACCGTGTTCATGCTGTTGGATGGATTTGCGCCATTTCTAGCATCGCAGTGTTCGCTGCTCCCTTAAGCAAAATGAGGAGGGTCATAAAAACCAGTAGTGTAGAGTTCATGCCATTTTCACTGTCCTTGTTTCTTACCCTCTGCCCCATCATGTGGTTTTTCTATGGGTTCTTCGACAAGGATGACTTCATTATGATTCCAAATGTGCTAGGATTTCTGTTTGGCATCTCTCAAATGATCTTATACATGATATACAAGAATGCTAAGAAGAATGGAGAAACCAATTGTACAGAGCCAGCAAGAAAGGGAGGGCACAGTGAACTCCAAACAGCACAGCTGCAATGGCAACAAATTCGATTTCCCATCAGTGGTGGAAATGAAAGAGAATCAACTCAATCAAGTTTGATGTTATGTTGA
Predicted protein sequences of Glyma08g48281
>Glyma08g48281.1   sequence type=predicted peptide   gene model=Glyma08g48281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QSIPYVVALLSALLLLYYGFIKTNATLIITINCIGCVIEVSYLSMCIIYAPRKQKISTLVMILIADIGGLALTMLIIITFAVKAINRVHAVGWICAISSIAVFAAPLSKMRRVIKTSSVEFMPFSLSLFLTLCPIMWFFYGFFDKDDFIMIPNVLGFLFGISQMILYMIYKNAKKNGETNCTEPARKGGHSELQTAQLQWQQIRFPISGGNERESTQSSLMLC*






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