Glyma08g48270 - SoyBase

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Report for Sequence Feature Glyma08g48270

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46923377
stop:	46924940
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g48270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16170	AT	Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein \| chr5:5277926-5279751 FORWARD LENGTH=411	SoyBase	E_val: 8.00E-116	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF02485	PFAM	Core-2/I-Branching enzyme	JGI		ISS
UniRef100_I1KZM9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KZM9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6AVG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6AVG1_ORYSJ	SoyBase	E_val: 7.00E-113	ISS

Expression Patterns of Glyma08g48270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g48270

Paralog	Evidence	Comments
Glyma18g53260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g48270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g367200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g48270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g48270

Limit To All Plant Sequences

>Glyma08g48270.2   sequence type=CDS   gene model=Glyma08g48270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCTACCAAGAGTTGTTCCTCAAAGCATCATCCATGATTTCAGGTACTCAAGATTTTACCGAGCAAACCGTTCCAAAAGTGGCCTTCATGTTCTTGGCAAGAGGTCCACTACCCCTGGCACCCTTGTGGGAGAAATTCTTCAAAGGCCATGATGGATTTTACTCCATTTACCTGCACCAACATCCTTGTTTCAGTGAAACCATGCCTGAAGATTCAGTATTCTATGGAAGAAATATTCCTAGCGAGCTAGTGGTCTGGGGTGCACCATCATTGATGGATGCCGGAAAACGTCTTCTAGCAAATGCACTGATGGACTTATCCAATCAACGTTTTGTTCTGCTTTCAGAATCCTGCATTCCGTTATTTGGCTTCAGAACCATATATGACTATCTCATGAACTCAACCATGAGCTTCTTAGACTCTAATGATGACCCAGGATACAATGCCAGAGGAAGATACTGCCCAAAAATGTGGCCTATAATTAACATAACCGATTGGAGAAAAGGGTCTCAATGGTTTGAGGTGCATCGTGAGCTTGCCATTCACATTGTATCTGACACCAAATACTACCCTATAGTTCAACACTATTGCACTTCACCATGCTTTGCAGAAGAGCATTTTATACCAACTTTTGTGCATATGATGTACCCTCAATTAAGCTCCAATAGTAGCATCACGTGGGTGGATTGGTCAAGGGGTGGCCCTCATCCTCGAACATTTGGGCCGAATGATATTACAGAAGCGTTTTTGAACCACATGCGGTTTGGATCAACATGTGTTTATGTAGGCAATATCAGCAACATGTGCTTCCTTTTTGCAAGAAAGTTTCATCCAAGTGCATTAAAGCCTCTATTATTGCTATTGTCTCCATTGTTGCTTGGTATTGATACTTAA

Predicted protein sequences of Glyma08g48270

Limit To All Plant Sequences

>Glyma08g48270.2   sequence type=predicted peptide   gene model=Glyma08g48270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTYQELFLKASSMISGTQDFTEQTVPKVAFMFLARGPLPLAPLWEKFFKGHDGFYSIYLHQHPCFSETMPEDSVFYGRNIPSELVVWGAPSLMDAGKRLLANALMDLSNQRFVLLSESCIPLFGFRTIYDYLMNSTMSFLDSNDDPGYNARGRYCPKMWPIINITDWRKGSQWFEVHRELAIHIVSDTKYYPIVQHYCTSPCFAEEHFIPTFVHMMYPQLSSNSSITWVDWSRGGPHPRTFGPNDITEAFLNHMRFGSTCVYVGNISNMCFLFARKFHPSALKPLLLLLSPLLLGIDT*

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