SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G16150 | AT | Annotation by Michelle Graham. TAIR10: plastidic GLC translocator | chr5:5272904-5275678 FORWARD LENGTH=546 | SoyBase | E_val: 0 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0010353 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to trehalose stimulus | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity | SoyBase | N/A | ISS |
| GO:0015144 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0022857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG0254 | KOG | Predicted transporter (major facilitator superfamily) | JGI | ISS | |
| PTHR24063 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24063:SF84 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00083 | PFAM | Sugar (and other) transporter | JGI | ISS | |
| UniRef100_G7KUB8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hexose transporter n=1 Tax=Medicago truncatula RepID=G7KUB8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337F98 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337F98 related cluster n=1 Tax=unknown RepID=UPI0002337F98 | SoyBase | E_val: 0 | ISS |
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Glyma08g48255 not represented in the dataset |
Glyma08g48255 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g53270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g367100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g48255.1 sequence type=CDS gene model=Glyma08g48255 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACATCATGAGTAGTAGTAGAAGCAGAGGCAGCTGGTGCGGTTTGTGGCCTGGTTCCTTCAATATGGAAACTGAGTTGACTATTAGAGGAAAGAGTTTTGGTGGCATTTTTGGCTCCTCTGCTAAGCCTAGATCACTCAGGGTTCAGTCTTCTGATGAAGATGTTGAGGATCTTGTCCCCTCTAATATTTCGGGCAAACCTTCTGGAACTGTTCTGCCCTATGTTGGTGTTGCTTGCCTTGGAGCCATGTTATTTGGTTATCATCTTGGGGTGGTAAATGGTTCTCTTGAGTACCTTGCCAAGGATCTTGGAATCACCCAAAACACTGTTATACAAGGATGGATTGTCAGTGCACTGCTTGCTGGTGCTACTGTTGGTTCATTTACCGGTGGAGCATTGGCTGACAAATTTGGCCGGACTAGGACTTTTCAGTTGGATGCAATCCCTTTAGCAATTGGAGGATTTCTTTGTGCTACTGCTCAGAGTGTTCAGACAATGATCATCGGTCGCTTGCTAGCTGGCATAGGAATTGGCATAACATCTGCAGTTGTACCACTTTACATATCTGAGATTTCTCCAACCGAAATTCGGGGTGCACTTGGATCCGTTAATCAACTTTTTATATGTATTGGAATTCTTGCAGCACTACTGGCTGGTTTGCCTCTGGTGGGAAATCCTATATGGTGGCGGACAATGTTTGGAATTACTGTAGTTCCATCTGTTCTGTTAGCACTTGGAATGACTATCTCTCCAGAAAGTCCTCGGTGGCTCTTTCAGCAAGGAAAAATATCTGAAGCTGAAAAGGCTGTTAAAACACTATATGGAAAAGAAAGAGTGGCTTTGGTTATGCATGACTTGACAGCAGCAAGTGAAGGTTCTTCTGAACCTGAAGCAGGATGGTTTGATCTGTTTAGTAGTCGGTATAGGAAAGTGGTCAGTGTAGGGGCAACACTTTTCTTGCTCCAGCAATTGGCAGGAATAAATGCAGTGGTCTATTATTCAACTTCTGTTTTCCGCAGTGCTGGAATTGCTTCTGATGTTGCAGCAAGTGCACTGGTTGGTGCATCAAATGTTTTTGGCACAATTGTTGCTTCGTCCTTGATGGACAAAAAAGGAAGGAAACGTCTCCTTATCACAAGCTTTAGTGGGATGGCTGCTTCTATGTTGCTTCTTTTCGTGTCTTTCACTTGGAAGGTCCTTGCTCCATACTCTGGCACCCTTGCAGTCCTTGGGACTGTCCTCTATGTCCTATCATTCTCTCTTGGTGCTGGTCCTGTGCCTGCCCTTCTTCTACCAGAGATATTTGCATCAAGAATCAGAGCAAAAGCAATTTCTTTGTCATTAGGCACACATTGGATCTCCAACTTTGTCATCGGGCTCTATTTCTTGAGTGTAGTTAACAAGTTTGGTATCAGCATAGTGTACTTGGGCTTCTCAATTGTCTGTCTTCTCACTGTTGTGTACATAGCTCGTAACGTTGTGGAAACAAAAGGTCGATCGTTGGAAGAAATAGAACGTGCACTTAGTCCTGCAACATAA
>Glyma08g48255.1 sequence type=predicted peptide gene model=Glyma08g48255 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNIMSSSRSRGSWCGLWPGSFNMETELTIRGKSFGGIFGSSAKPRSLRVQSSDEDVEDLVPSNISGKPSGTVLPYVGVACLGAMLFGYHLGVVNGSLEYLAKDLGITQNTVIQGWIVSALLAGATVGSFTGGALADKFGRTRTFQLDAIPLAIGGFLCATAQSVQTMIIGRLLAGIGIGITSAVVPLYISEISPTEIRGALGSVNQLFICIGILAALLAGLPLVGNPIWWRTMFGITVVPSVLLALGMTISPESPRWLFQQGKISEAEKAVKTLYGKERVALVMHDLTAASEGSSEPEAGWFDLFSSRYRKVVSVGATLFLLQQLAGINAVVYYSTSVFRSAGIASDVAASALVGASNVFGTIVASSLMDKKGRKRLLITSFSGMAASMLLLFVSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAISLSLGTHWISNFVIGLYFLSVVNKFGISIVYLGFSIVCLLTVVYIARNVVETKGRSLEEIERALSPAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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