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Report for Sequence Feature Glyma08g48230

Feature Type:gene_model
Chromosome:Gm08
Start:46895307
stop:46896444
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67030AT Annotation by Michelle Graham. TAIR10: zinc finger protein 6 | chr1:25016644-25017237 FORWARD LENGTH=197 SoyBaseE_val: 4.00E-26ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR10032Panther ZINC FINGER PROTEIN-RELATED JGI ISS
PTHR10032:SF122Panther JGI ISS
UniRef100_G7KUB7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Medicago truncatula RepID=G7KUB7_MEDTR SoyBaseE_val: 2.00E-44ISS
UniRef100_I1KZM6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZM6_SOYBN SoyBaseE_val: 4.00E-125ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g48230 not represented in the dataset

Glyma08g48230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g53300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g366900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g48230.1   sequence type=CDS   gene model=Glyma08g48230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAATTGAATACCATGCAAAATCCAATACTAACACTCCACCCCTAAAGCTCTTCGGCATCAACATTAACAAGTCCCCAGAAGATCAAACTCACGAATTAGCAAGTTCGAATTCCGAGACTTTCATGAATTCAAGAAAGTACGAGTGCCAGTACTGCTGCAGAGAATTCGCAAACTCACAGGCACTGGGAGGGCACCAAAACGCGCACAAGAAAGAGAGACAGCTCTTGAAACGTGCCCAAATGCAAGCTGCTCGTGGTTTTGTCGCTTCACAAATTCATAACACAATCATATCAAGTTTATCTCCACAGTCTCAGCCACCTTTGTCGTGGTTATGCACACCACATGGTGGTGCTGCCTTTGTGGCTCCTGGAAGACTAGTGTATGCTGCAGCTGCTGATGGCCGTGCCCGCCACCACCATCCTCTACCACGGTTCGGTGGCTTCAACGGCGGTGATGGTAGTGGTGGTGGTCGTGAACGAGTCTTCGATTTGGATTTGCATCTTAGCCTATGA

>Glyma08g48230.1   sequence type=predicted peptide   gene model=Glyma08g48230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEIEYHAKSNTNTPPLKLFGININKSPEDQTHELASSNSETFMNSRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMQAARGFVASQIHNTIISSLSPQSQPPLSWLCTPHGGAAFVAPGRLVYAAAADGRARHHHPLPRFGGFNGGDGSGGGRERVFDLDLHLSL*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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