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Report for Sequence Feature Glyma08g48200

Feature Type:gene_model
Chromosome:Gm08
Start:46887510
stop:46888510
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g48200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38300AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67035.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:15306022-15306813 FORWAR SoyBaseE_val: 1.00E-28ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1KZM4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZM4_SOYBN SoyBaseE_val: 2.00E-123ISS

Expression Patterns of Glyma08g48200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g48200
ParalogEvidenceComments
Glyma18g53320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g48200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g366700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g48200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g48200
>Glyma08g48200.1   sequence type=CDS   gene model=Glyma08g48200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACTTTGAGAGAGGACCAAGGTACCACGCATACGCTGCGTTGAGGGAAACAAAGCTTCGCATGAGGCAACAAGAAGAAGAAGAGGGTGTTGTTGAAGCAAAGGTTTCAACCCCACCAAGAAAAAAACAAGTCAAGTTTCAAGGTGCTGTGGTTTCAGGGAGAAAAGGGTCATCATCTCTTGTGGCTCAGTCTGTGCCGGATTTTTCTAATGTGTTGAGGAAGGAGAATAGGAAGCCGGTGAATGGTAACATGATGTTACCTCCTTTGATGGAGTTGACGCCACCTCCTTCTTCTTCCAAGAGTGGCTGTGGTGTTTTTTCGAGTGCGAGAGGGAGTAAGTCAGCGAATGCGGGTGAGAAGAGAAGGGGTGGTGTTCTCATGCCCAGGAAGAGCTATGCCAGCATTGATGAACTCAAGGGTGGTTTGTCTTCTGCTACTTCTAATGCCATCAATGCTGACAACAGAGGAGGAAGGAGTAGCAGGCTCATCACAAGAAAGACTGTTTTAGGGTATAGGCATATTTGA
Predicted protein sequences of Glyma08g48200
>Glyma08g48200.1   sequence type=predicted peptide   gene model=Glyma08g48200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDFERGPRYHAYAALRETKLRMRQQEEEEGVVEAKVSTPPRKKQVKFQGAVVSGRKGSSSLVAQSVPDFSNVLRKENRKPVNGNMMLPPLMELTPPPSSSKSGCGVFSSARGSKSANAGEKRRGGVLMPRKSYASIDELKGGLSSATSNAINADNRGGRSSRLITRKTVLGYRHI*






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