SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67040 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25019105-25021922 REVERSE LENGTH=82 | SoyBase | E_val: 2.00E-82 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21726 | Panther | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED | JGI | ISS | |
| PTHR21726:SF12 | Panther | OS03G0302900 PROTEIN | JGI | ISS | |
| UniRef100_I1KZM3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KZM3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FZH7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F1O19.10 protein n=1 Tax=Arabidopsis thaliana RepID=Q9FZH7_ARATH | SoyBase | E_val: 1.00E-79 | ISS |
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Glyma08g48190 not represented in the dataset |
Glyma08g48190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g53330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g366600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g48190.2 sequence type=CDS gene model=Glyma08g48190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGATTCCTCGGTGAAGAATTTGGCTATCACGGAGAAGAAGGTGCAGCAGCATAAGCCTGGTGGTTGTGTTGGCATTTTCTTTCAGCTCATTGATTGGAAGAGGAAACTCTCCAAGAAGAAGCTCTTCTCCAAGAAGCTTCTTCCTCCTGCTCGTGCAAAAAAGTTTAAGGGAGATGAAAAAATGCCGAATTCCAAGCTTCACTTGATTGCTAATGAGAATAGTGGAGGTTTTCCTAGTGCTAAAAAAGGTGGGAATCATGGTGTAGATGGAGAGCAAAAGAGTGACTTGCGAGTTCCGAGTCTGGTAGCTAGGTTGATGGGTCTAGAATCTATTCCGGCTGCTCAGCGAGATAAGTCCAAGAAAGCCGTGTTGGCTGATGTTTGTGCTGATGGGAAGAAGGAGTCTTCGGCTGATCATGGTGAGTTGGATAGGCAAGGTGTCGATTTGGAAATGGGAGTTGTAAAACATGATTCAAGACCTCAGAAGCTTCAGAAAACCGGGGTGTATGAGAGAAGGGCAGTGACTAGGTTTGGAGCTGAGGCACTGCAAATTAAGAGTGTTTTGTCGCGAGCAAGAAAATATAATCATCATCATCCAAAGCTTGCTTCTTCTTTGAAAAGTCCGAGAGTTCCTTCTGGAAAAAGTGCTTCTCGAAGCGCTAGGTTAATAGGAGCAGCTACAAAAATTTTGGAACCTGGACTGCAAAGCAGAAGTAGAGCTAAAAATTCTCTCACATATCCTGCTTCCTTGTATCCTCATAAGACTGGCATTGTGTCAAATGGTGTGGAAGATGGGTCAGCGATTATGCAAAATCAATCTTGTTATAAAACCAGCCCATGCAAACAATTGATGGGGCAGACCTCTTGCAAAAACTGTGGTAATTTGCTAGATGTTGTTGACTGCAAGCTTGAGGTTGGGGGACAGCCTTTGGTTCCTCCGCCCATTGTTTCAGATGTGATCACAGCTACATCTATGGAGAAGAAGGGAAAGTCATTCCCTCCTCATGGACATGAAAGAGATGTAGTTCTTCCGATAAGTCAGGAAAAGCTCATATCTCTTGTTACTGAAGCAAAGGGTAAAAATAATGCACATCAATCATGGAGTGAACCCACTGCCAGAAGAATGCCAATGCCCCATGACGGTCCAGCTAAATGGAATTCATCTTGCCTATCATCAAGGACCCTAGAGGATGATGCATCTTCTTTTGCCTTAAAACACAAAACTCAAACACAAGAACAGATGTTAAGCAGTGAAAGATATTCATCTGGATCTACAACAAGTGATATGCAAGTAAAAAGGGTATTGTCATCTATGAGTGCTGTGAATGGAACTAAAGACTTTGTTGCTATGAATAGAAGTCTAAGTGGCCGATCAAGGATGAGGTCACCTACCAAAGCGGATAGTTCCAAATTTGACCTAGAGAAAAAACCTTACAATCGACAGCAGAGTTCCTTGTCTCATGGAAGGACATTAGAGAGAAAAAGAAGGATCCCTAATGTCACACAACTGGAAGGCGCGGGTTCTGTTTATTCAGTTGATGCAAAACAGAGAAATCTCCATTCTGGTGGAATGGGTGGCAAAATAAGGGACTTCAATGCTTCCTCCCTGAACAATTCTATTGTAAAAAATAAACAAGTTGGTCAAGGAGAAAGATTTATTAAGGTTAATGACAATAAGATCAATGTAGTGTCATTTAATCCCCCCTTGAAGCAAAAGATAGGAATCCATGGCAAGAGGGAAGAGACAAGCAGTGATAATGAGAGTATGAGGTATTTCCGAAGGCCTTCGCCTCTGAGAGTTGATGCTTTAGGTGCCTTTCTAGAACAAAAATTGAAGGAATTAACCTCTCAAAGAGATGAGGAGTTGGCTACAGGTGCTCCACCTAAAAAATCGAGTGCCATGATTCTTCAAGAGCTGATATCTGCTCTAAGTTCCGAGAATCTGATCTGTCATGATGATCATCACATGTTTAATGAAAATGTTGGTTTCCATTATGGGGCAAAACAAGAAAGGTTATTAGGAACCTCTTGCAATGGTAATCATCTGAGTCCTGGATCTGTTTTGGAAGCTTCTTTTTCTTCCAGTAGTCTTGATGAAAGCTCAGGGCATGGTTTTCACCCTGATTCCATGAATTACTCATATTATGGTCAACTGGAACATGATACTGAACTTTCAGATTCTGCAACATCCTTTAAAAAAGGAAGCACAGGTGAGATGCTGAGTGATCTTATCAACCAAATTCCCAGGGCATTAGAAAGTTTGCTCACTTTGGGGACAGAATTGACAAGAAGCAAGCTTGGCCATATGAAGGATATTCTCTTGCATGCTGAGTTAGTGCTTGGAATTGCAACTGATCGCAGAGAGGATGAAGGGCCACAACTTCTAATTTATCGGTTTCTTGGTGATGATCTTGACAGTATGGCGAGTGATGCTATGTGGACTGATGCTAATGGCGTTGTTGTGGGTTGTGAGGATTCTAAACAGAGAAAGGAGCTAAAGGGGTTTCTCCTTGATTGTGTTATAGAATATCTAGAATCAAATTGCTGCCAATATTTTAACTCTGGATCCAAGGCATGGACAAAGCTGCCCTTATGCATGAAAGCTGAGATGTTGGCTCAAGAGGTGAAGAGGGAGATCAATGAGTGGTTATCTATGGTTGGGATGGTACCTGATGAAATTATAGAATGGGAAATGAGCCACTCCTTGGGGAAATGGACTGACTTTGATATTGAAGCATTTGAGGCTGGTGTTGATATAGATGGGGATATACTTCAAATTTTGGTTGATGAAGTTGTTCAAGATCTTGCAGGTTGCAAGCAAGGCACCATTTCCTTCTAA
>Glyma08g48190.2 sequence type=predicted peptide gene model=Glyma08g48190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNDSSVKNLAITEKKVQQHKPGGCVGIFFQLIDWKRKLSKKKLFSKKLLPPARAKKFKGDEKMPNSKLHLIANENSGGFPSAKKGGNHGVDGEQKSDLRVPSLVARLMGLESIPAAQRDKSKKAVLADVCADGKKESSADHGELDRQGVDLEMGVVKHDSRPQKLQKTGVYERRAVTRFGAEALQIKSVLSRARKYNHHHPKLASSLKSPRVPSGKSASRSARLIGAATKILEPGLQSRSRAKNSLTYPASLYPHKTGIVSNGVEDGSAIMQNQSCYKTSPCKQLMGQTSCKNCGNLLDVVDCKLEVGGQPLVPPPIVSDVITATSMEKKGKSFPPHGHERDVVLPISQEKLISLVTEAKGKNNAHQSWSEPTARRMPMPHDGPAKWNSSCLSSRTLEDDASSFALKHKTQTQEQMLSSERYSSGSTTSDMQVKRVLSSMSAVNGTKDFVAMNRSLSGRSRMRSPTKADSSKFDLEKKPYNRQQSSLSHGRTLERKRRIPNVTQLEGAGSVYSVDAKQRNLHSGGMGGKIRDFNASSLNNSIVKNKQVGQGERFIKVNDNKINVVSFNPPLKQKIGIHGKREETSSDNESMRYFRRPSPLRVDALGAFLEQKLKELTSQRDEELATGAPPKKSSAMILQELISALSSENLICHDDHHMFNENVGFHYGAKQERLLGTSCNGNHLSPGSVLEASFSSSSLDESSGHGFHPDSMNYSYYGQLEHDTELSDSATSFKKGSTGEMLSDLINQIPRALESLLTLGTELTRSKLGHMKDILLHAELVLGIATDRREDEGPQLLIYRFLGDDLDSMASDAMWTDANGVVVGCEDSKQRKELKGFLLDCVIEYLESNCCQYFNSGSKAWTKLPLCMKAEMLAQEVKREINEWLSMVGMVPDEIIEWEMSHSLGKWTDFDIEAFEAGVDIDGDILQILVDEVVQDLAGCKQGTISF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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