Report for Sequence Feature Glyma08g48160
Feature Type: gene_model
Chromosome: Gm08
Start: 46872917
stop: 46874655
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g48160
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G67050 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). | chr1:25028862-25029656 REVERSE LENGTH=264
SoyBase E_val: 4.00E-41 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009741 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1KZM2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KZM2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9FZH6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F1O19.11 protein n=2 Tax=Arabidopsis thaliana RepID=Q9FZH6_ARATH
SoyBase E_val: 2.00E-38 ISS
Expression Patterns of Glyma08g48160
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g48160
Paralog Evidence Comments
Glyma18g53340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g48160 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g366400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g48160
Coding sequences of Glyma08g48160
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g48160.1 sequence type=CDS gene model=Glyma08g48160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGTTGATCTTTGCTCAGAAAACTGTGTGGCTGCTTCCTCTTCCTCTTCTTCTGTGAGTCCAAGAATCTCATTCTCACATGACTTCTCCCAATCTGATGTCATCCCTGTTGAGCAACTCCCTTTTAGATCAAACTCTTCTGGCTTGAATCCCACCATTGATTTTGATTTTTGTGTCAGTGAGAGTTTTGAGCTTGAGTCATCTTCAGCCGATGAGCTTTTCTCACATGGGAGGATCCTTCCCACTGAGGTCAAGAGAAAGAATAATGCTGTTCCACCTATGAAGCAATTAGCACCAAAGAGTACTTCTCCATTGCCTCCTCCTTATGCTGCTCCTAACGGTGTCTCCACTAGTAAAAACTTGAAGAAAGAGATTAACCCCAAAGAAAGCAAGTGTTTGAATGATGAAGTGTATGAGAAGCAAAGTTCAAAGTCTTCCTTTTGGATCTTCAAGAGAAGTAGTAGTTGTGGAAGTGGACCTAGAAGGAGCTTTTGTCCTTTGCCACTTCTATCTAGAAGCAATTCAACTGGATCATCAACCCCAAGTGTTAAGAGGAGTCATCCTCTTTCAAAGGAGGGTACTGTTAACAACAATATTAAACAGAAACATTCTTCCACAAGGTTGATGCCAAACGGTTATCTTCATCATCATCATCATCAAAAGCCTCCATTGAATTACAAGAGTACTCATCATGGATCTTATGGTAACAGTGTTAGAGTCAATCCTGTCCTCAATGTTCCACCTGCAAACCTATTTGGTTTGGCTTCAATCTTCTCCAACAATAGAGACAAGAGCAAGAAGTAG
Predicted protein sequences of Glyma08g48160
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g48160.1 sequence type=predicted peptide gene model=Glyma08g48160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAVDLCSENCVAASSSSSSVSPRISFSHDFSQSDVIPVEQLPFRSNSSGLNPTIDFDFCVSESFELESSSADELFSHGRILPTEVKRKNNAVPPMKQLAPKSTSPLPPPYAAPNGVSTSKNLKKEINPKESKCLNDEVYEKQSSKSSFWIFKRSSSCGSGPRRSFCPLPLLSRSNSTGSSTPSVKRSHPLSKEGTVNNNIKQKHSSTRLMPNGYLHHHHHQKPPLNYKSTHHGSYGNSVRVNPVLNVPPANLFGLASIFSNNRDKSKK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
