Glyma08g48080 - SoyBase

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Report for Sequence Feature Glyma08g48080

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46799467
stop:	46804490
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g48080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27970	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr5:10004720-10015429 FORWARD LENGTH=1630	SoyBase	E_val: 4.00E-37	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0050790	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005086	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ARF guanyl-nucleotide exchange factor activity	SoyBase	N/A	ISS
PF09324	PFAM	Domain of unknown function (DUF1981)	JGI		ISS
UniRef100_G7I7F7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MON2-like protein n=1 Tax=Medicago truncatula RepID=G7I7F7_MEDTR	SoyBase	E_val: 3.00E-50	ISS
UniRef100_UPI000233CC4D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CC4D related cluster n=1 Tax=unknown RepID=UPI000233CC4D	SoyBase	E_val: 3.00E-59	ISS

Expression Patterns of Glyma08g48080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g48080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g48080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g48080

Limit To All Plant Sequences

>Glyma08g48080.1   sequence type=CDS   gene model=Glyma08g48080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTTCTTAAAATAATTTGTATTTCCTGCAGTGATCGATTTTTGTCAGACAAAGCTATAGATTTAATTGATGAAGCAGGCAGGCTCTCGAATCTTTTGTCTATTATTGGGCTAATTTTGCTAGATTTACATGCTTCTAGTTACCTGAAGAAACAATTTCAGGCCATTGTTGCCACCTCTTATCCTTGTCCTCCTTGTCACTGTGATTGCTCTCTTCAACCCCTTCTTACTCTCCCCAAGAATTGTATATACACAAAATTTCCTCCAACAAATGTTGGTCATATTCTGTTTTTAGAAAACATAGTAGGATGTGTTTGGTTACCTGTTAGAGACAATCAATATGAAGGGAAAAAAAAGGAAAGAAATTTGAGGCTACAGAACCTGCTCTTTCCTGGCATATATCAGGTGATGCTGTCCTATAGCTTGATCCATCCGAATCAGTTTACCAAACTCAACTTCAGGGTACATGATTATATCTACAGGAGGTCTCCACCCCTGTCCCAAAGTTCACAAGGGAGTTATCTACCCAATCCAGTGACTTCAATATACTCTCTTCTTGAACTCTCAGATAACTTTCATCTACTACACCCAACTTATGATGAGCATTTCTTTGAGAGCTTTGCTCTGATGCATATATCTTCTGTAAAGTCTCTCCTCTCTGCATTATGTCAACTTTCACATCAATGCATGATTTCAAGCAGTTTGGGACCGACAACTAGATTTGAGCCATTTTGGGATCAAGTTATTAGTCACTTTCTCGAGTTTCATTTTCATTGCAATGGATATTTTGACTTGCTTTTGCACCTACCTGATAATTCTAATCCACATTTGAAAAACATGGCACTTGATGCGCTTGATCAGTCTATATCTGCTGTCTTAGAGGTCTTAATGTCTGTTGAATGTTCTGTCATATCTCCACTAAAGGTGCTTTATTTTTCTACTCAAAGTGTAGATGTTCGTGTTGGATCTTTGAAAATTCTTTTGCATGTCTTAGAGAGATATGGACAGAAACTTCATTACAGCTGGCCTAATATACTTGAAATGTTGAGAATTAAATGTGAGATGAACAATTTGAATTTCGAAATTCATACACCTGCGATTTCAAAGACGGTTGTAAACCGACGTGAAAAGCCCCATACAAGTGTCTTTGAAATCAATTTTCTTAGTAGTGTGCACAGAATGGCTAGCGAAGCAAGGGTCTTCATCGGATTAGTACTGAATGTAATCCTCTTAAGTTGGCAAGATTTCCAAAAGTTTCTTGCTCACTTCTCAGGATCAATCAACTATCCTTTTGCAATTCATTTAGTATTT

Predicted protein sequences of Glyma08g48080

Limit To All Plant Sequences

>Glyma08g48080.1   sequence type=predicted peptide   gene model=Glyma08g48080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFLKIICISCSDRFLSDKAIDLIDEAGRLSNLLSIIGLILLDLHASSYLKKQFQAIVATSYPCPPCHCDCSLQPLLTLPKNCIYTKFPPTNVGHILFLENIVGCVWLPVRDNQYEGKKKERNLRLQNLLFPGIYQVMLSYSLIHPNQFTKLNFRVHDYIYRRSPPLSQSSQGSYLPNPVTSIYSLLELSDNFHLLHPTYDEHFFESFALMHISSVKSLLSALCQLSHQCMISSSLGPTTRFEPFWDQVISHFLEFHFHCNGYFDLLLHLPDNSNPHLKNMALDALDQSISAVLEVLMSVECSVISPLKVLYFSTQSVDVRVGSLKILLHVLERYGQKLHYSWPNILEMLRIKCEMNNLNFEIHTPAISKTVVNRREKPHTSVFEINFLSSVHRMASEARVFIGLVLNVILLSWQDFQKFLAHFSGSINYPFAIHLVF

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