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Report for Sequence Feature Glyma08g48070

Feature Type:gene_model
Chromosome:Gm08
Start:46790283
stop:46792610
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g48070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02555AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits to 130 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:540024-540955 REVERSE LENGTH=162 SoyBaseE_val: 3.00E-47ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_D7M813UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT5g16110 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M813_ARALL SoyBaseE_val: 4.00E-45ISS
UniRef100_I1KZL6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZL6_SOYBN SoyBaseE_val: 4.00E-120ISS

Expression Patterns of Glyma08g48070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g48070
ParalogEvidenceComments
Glyma18g53410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g48070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g365500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g48070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g48070
>Glyma08g48070.1   sequence type=CDS   gene model=Glyma08g48070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTATTATAATCTTCAGAAGAATGCCTTCCCAGCCTGTGAAGAGATGAGAGGCTCTATTCCCATTGCTGATCAGAATGGTGGACCTGTCTTTTGCCCTAAGCCACGCCGAGCTGGGGTTTTAATGAACTTGCCTATTCGGCCAGTAAAATGGCATTTAGGTCAACAAGGTGAGGGGTCTGATTCAAAAGCTGGGGCAGAACTACTTGACATTGTTCTCAAGAGGGAGAGTTATGGGGAAGAATTTGCAAATCAGATACCTTCATCTCCTCCATATTTCTGTGGTTCTCCTCCAGTTCGGGCTTCTAATCCCTTGATCCAAGATGCTCGATTTGGAGATGAAGTATCAACAATTTCATCGCCTTCAGGTTTACTGTCTCCATCTTCAGCATCTCGCAAAGCAGGATGTGCTAGGATGAAGTTTGGACTTAAACCGGCTGCTGTTAGAGTAGAAGGATTTGATTGCCTCAGCAGGGATTGCCAGAATTCCGGCATCCCGGCTGTTGCTTAA
Predicted protein sequences of Glyma08g48070
>Glyma08g48070.1   sequence type=predicted peptide   gene model=Glyma08g48070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNYYNLQKNAFPACEEMRGSIPIADQNGGPVFCPKPRRAGVLMNLPIRPVKWHLGQQGEGSDSKAGAELLDIVLKRESYGEEFANQIPSSPPYFCGSPPVRASNPLIQDARFGDEVSTISSPSGLLSPSSASRKAGCARMKFGLKPAAVRVEGFDCLSRDCQNSGIPAVA*






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