SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g48050

Feature Type:gene_model
Chromosome:Gm08
Start:46778586
stop:46779788
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g48050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATMG00560AT Annotation by Michelle Graham. TAIR10: Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349 SoyBaseE_val: 8.00E-45ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005762GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial large ribosomal subunit SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR13691Panther RIBOSOMAL PROTEIN L2 JGI ISS
PTHR13691:SF2Panther 50S RIBOSOMAL PROTEIN L2P JGI ISS
PF00181PFAM Ribosomal Proteins L2, RNA binding domain JGI ISS
UniRef100_D5I3E9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L2 n=1 Tax=Cucurbita pepo RepID=D5I3E9_CUCPE SoyBaseE_val: 1.00E-54ISS
UniRef100_UPI0001BA5DF7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001BA5DF7 related cluster n=1 Tax=unknown RepID=UPI0001BA5DF7 SoyBaseE_val: 1.00E-142ISS

Expression Patterns of Glyma08g48050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g48050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g365200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g48050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g48050
>Glyma08g48050.2   sequence type=CDS   gene model=Glyma08g48050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGCGTGAAGAGAGCACTGAGGCAGTTCACCTTCGGAACCGGCAAGACCGCCGGTCGCAACTCGGCGGGGCGCATAACGTCCTTCCACCGCGGCGGCGGAGCCAAGCGCTTGCAACGAACCGTCGATCACAAACGGAATACCGCTTCTTCTCTCGGCGTCGTCGAAAGGATCGAGTACGACCCTAACCGCTCCTCCAAAATCGCCCTCGTTCGCTGGATCGAAGGCGTCCATCACCGTCGCCGCCGCGCTGCCTCCGCCAACGCCGCTTCGCCCAAGCTCCTCCATCTCGATCCCGCCACTAACGACGCTAACAGCATTCGCGGCGTTTTCGCTCTCAATTCGATGCTGCCGCACACTCACGCTGGAACATCCTCCAGAGAGCTTTTTCTGTCTGCGTTGGCGTCCAAGGCCAAGGGATCAGAATCGGAATCGGTTTCTTCGCTCGGAATTCCGAGGTTCGCGGTTGCGGCGGCGAGGGCTCCGTTCTTCGCGCAGCGTGCGAGAGGGGAGGAGACGTTGGAGGTTCGGCATTGGAGAAGGAATAGCGACGCGTGGGCGCATAGGAACAAACGTAAAGCAGCGATTTCGTGGCAAAGCATTGCTCGTTGA
Predicted protein sequences of Glyma08g48050
>Glyma08g48050.2   sequence type=predicted peptide   gene model=Glyma08g48050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVKRALRQFTFGTGKTAGRNSAGRITSFHRGGGAKRLQRTVDHKRNTASSLGVVERIEYDPNRSSKIALVRWIEGVHHRRRRAASANAASPKLLHLDPATNDANSIRGVFALNSMLPHTHAGTSSRELFLSALASKAKGSESESVSSLGIPRFAVAAARAPFFAQRARGEETLEVRHWRRNSDAWAHRNKRKAAISWQSIAR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo