Glyma08g48020 - SoyBase

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Report for Sequence Feature Glyma08g48020

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46730191
stop:	46731102
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g48020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19040	AT	Annotation by Michelle Graham. TAIR10: isopentenyltransferase 5 \| chr5:6362389-6363381 REVERSE LENGTH=330	SoyBase	E_val: 6.00E-75	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0008033	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA processing	SoyBase	N/A	ISS
GO:0009691	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0009824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: AMP dimethylallyltransferase activity	SoyBase	N/A	ISS
GO:0016765	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups	SoyBase	N/A	ISS
GO:0052622	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP dimethylallyltransferase activity	SoyBase	N/A	ISS
GO:0052623	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP dimethylallyltransferase activity	SoyBase	N/A	ISS
KOG1384	KOG	tRNA delta(2)-isopentenylpyrophosphate transferase	JGI		ISS
PTHR11088	Panther	TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED	JGI		ISS
PTHR11088:SF20	Panther	CYTOKININ SYNTHASE	JGI		ISS
PF01715	PFAM	IPP transferase	JGI		ISS
UniRef100_G7IW81	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isopentenyltransferase n=1 Tax=Medicago truncatula RepID=G7IW81_MEDTR	SoyBase	E_val: 7.00E-123	ISS
UniRef100_UPI0002337F48	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337F48 related cluster n=1 Tax=unknown RepID=UPI0002337F48	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g48020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g48020

Paralog	Evidence	Comments
Glyma18g53460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g48020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g364900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g48020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g48020

Limit To All Plant Sequences

>Glyma08g48020.2   sequence type=CDS   gene model=Glyma08g48020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCTTTATCTTGTTCTACACCTTTCCTCACCGAAAAAAAGAAGGTTCTTTTCATAATGGGTGCAACTGAGAGAGGCAAAACCAAGTTATCCATTAACTTGGACACTCAATTTCCTTCTGAAATCATTAACTCTGACAAAATTCAAATCTATAAGGGCCTTGACATTATCACCAACAAGGTACCAGAGTCAGAATGTCGTGGTATTTCCCATCATCTGATAGGCATTATTAACGATCCTGACTATGATTTCACTGTTGATGACTTTTGCAAACATGTCCTCAATGCTCTCGATCTCATCTTTGAAAATGGACACCTACCTATTATCGTGGGAGGCTCAAACACTTATCTTGCAACATTGCTTGAGGATCTCAACATGACTTTTCATTCCAAATATGATTGTTGCTTCATTTGGTATTTAGATAAAAGAGTGGACAAAATGGTTGATGCGGGAGTTGTGGATGAGATTCAAGAAAACTTTGTGCCTGGAGCAAATTACTCTCGTGGGGTTAGAAGAGCCATCAGGGTTCCTGAGCTAGGAGAGTATTTCCTGGTTGAGAAGGAAATTAGTGATAAGGCTGAAAAAGAGAAGATGCTACAACATGCTATTGCTAGAACCAAAGAGAACACTTGTAAATTGGTTGAGATGCAACTCTTGAAGATCCATAGGATTAACTATGAGCTTGGATGGGGAATGACCAAAATTGATTCCACAGTAGTGTTTGAGGCTATCTTAAAAGGAGTTGACTATAAGAACTTGTATCATGAAATTATATTCAAACCAAGCATGGAGATAGTGAAAAGATTCCTGCAGGAGACAACTCGAATGTGGGGAAAGACACCATGCCAATATGACGAACAAGTGACAATTTATACTTAA

Predicted protein sequences of Glyma08g48020

Limit To All Plant Sequences

>Glyma08g48020.2   sequence type=predicted peptide   gene model=Glyma08g48020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPLSCSTPFLTEKKKVLFIMGATERGKTKLSINLDTQFPSEIINSDKIQIYKGLDIITNKVPESECRGISHHLIGIINDPDYDFTVDDFCKHVLNALDLIFENGHLPIIVGGSNTYLATLLEDLNMTFHSKYDCCFIWYLDKRVDKMVDAGVVDEIQENFVPGANYSRGVRRAIRVPELGEYFLVEKEISDKAEKEKMLQHAIARTKENTCKLVEMQLLKIHRINYELGWGMTKIDSTVVFEAILKGVDYKNLYHEIIFKPSMEIVKRFLQETTRMWGKTPCQYDEQVTIYT*

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