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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G68590 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein PSRP-3/Ycf65 | chr1:25757593-25758169 REVERSE LENGTH=166 | SoyBase | E_val: 1.00E-54 | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0032544 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid translation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| PF04839 | PFAM | Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) | JGI | ISS | |
| UniRef100_B7FMM7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 30S ribosomal protein n=1 Tax=Medicago truncatula RepID=B7FMM7_MEDTR | SoyBase | E_val: 2.00E-60 | ISS |
| UniRef100_C6SYP6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYP6_SOYBN | SoyBase | E_val: 6.00E-109 | ISS |
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Glyma08g47990 not represented in the dataset |
Glyma08g47990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g364600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g47990.2 sequence type=transcript gene model=Glyma08g47990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATCCGTAAAGAAATTGCGGGTGACCCGATTGAAAGTGAGGCAGGTTCCTTATCTTGTTGGCTTTGACTCAAAAGCTGTGTGTGGCATCAGAAAATGAACAGTTTATCAATGGCACTTCTCCACCCAAATCTTCTTCCCACTTTCAATTCCAACACTCTTACCTTTCCTTCCATCAAACTCAAACCCTCACTCTCGCACGTGCCTTCTCCAACCCCCACACGCTTCAGTCTCTCTGTTTCCGCGGCGGAAACCACCGCTTTTGCCGCCCCTCCCACTCCCCAACCTGAGCTTGGAGTTGTAGTTAAGCCAACGGAGAAGCCGAGACTTGTGTTGAAGTTCATATGGATGGAGAAGAACATTGGAATTGCGCTTGACCAGATGGTACCGGGCCATGGCACCATTCCTCTGAGCCCATATTACTTTTGGCCCCGAAAAGATGCCTGGGAAGAGCTCAAGGAGTTGCTTGAGAACAAGCCTTGGATCTCTCAGAAGCAGATGATTATTCTTCTCAATCAGGCCACTGATATCATCAATTTGTGGCAACAGAGTGGTGGCAACTTATCCTGAACTCATTCATGTGCCAACATATTTCAATGATGTTTTTCCTTTTCATGTTATGTTTTTCTCTTGTACTGCATTTTCGGCTGTGCTCTTCCTCTTTCTATGTATGCCTGGCATGTGCTTGATTATTATTACTATCAACTAATCCATAAATTCTTTCTCGTGATTCATTAGTTTTTTCTCTGTCATATTTTATATCACTGACTAATGTTTGATTGCAA
>Glyma08g47990.1 sequence type=CDS gene model=Glyma08g47990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAGTTTATCAATGGCACTTCTCCACCCAAATCTTCTTCCCACTTTCAATTCCAACACTCTTACCTTTCCTTCCATCAAACTCAAACCCTCACTCTCGCACGTGCCTTCTCCAACCCCCACACGCTTCAGTCTCTCTGTTTCCGCGGCGGAAACCACCGCTTTTGCCGCCCCTCCCACTCCCCAACCTGAGAAGCTTGGAGTTGTAGTTAAGCCAACGGAGAAGCCGAGACTTGTGTTGAAGTTCATATGGATGGAGAAGAACATTGGAATTGCGCTTGACCAGATGGTACCGGGCCATGGCACCATTCCTCTGAGCCCATATTACTTTTGGCCCCGAAAAGATGCCTGGGAAGAGCTCAAGGAGTTGCTTGAGAACAAGCCTTGGATCTCTCAGAAGCAGATGATTATTCTTCTCAATCAGGCCACTGATATCATCAATTTGTGGCAACAGAGTGGTGGCAACTTATCCTGA >Glyma08g47990.2 sequence type=CDS gene model=Glyma08g47990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAGTTTATCAATGGCACTTCTCCACCCAAATCTTCTTCCCACTTTCAATTCCAACACTCTTACCTTTCCTTCCATCAAACTCAAACCCTCACTCTCGCACGTGCCTTCTCCAACCCCCACACGCTTCAGTCTCTCTGTTTCCGCGGCGGAAACCACCGCTTTTGCCGCCCCTCCCACTCCCCAACCTGAGCTTGGAGTTGTAGTTAAGCCAACGGAGAAGCCGAGACTTGTGTTGAAGTTCATATGGATGGAGAAGAACATTGGAATTGCGCTTGACCAGATGGTACCGGGCCATGGCACCATTCCTCTGAGCCCATATTACTTTTGGCCCCGAAAAGATGCCTGGGAAGAGCTCAAGGAGTTGCTTGAGAACAAGCCTTGGATCTCTCAGAAGCAGATGATTATTCTTCTCAATCAGGCCACTGATATCATCAATTTGTGGCAACAGAGTGGTGGCAACTTATCCTGA
>Glyma08g47990.1 sequence type=predicted peptide gene model=Glyma08g47990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSLSMALLHPNLLPTFNSNTLTFPSIKLKPSLSHVPSPTPTRFSLSVSAAETTAFAAPPTPQPEKLGVVVKPTEKPRLVLKFIWMEKNIGIALDQMVPGHGTIPLSPYYFWPRKDAWEELKELLENKPWISQKQMIILLNQATDIINLWQQSGGNLS* >Glyma08g47990.2 sequence type=predicted peptide gene model=Glyma08g47990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSLSMALLHPNLLPTFNSNTLTFPSIKLKPSLSHVPSPTPTRFSLSVSAAETTAFAAPPTPQPELGVVVKPTEKPRLVLKFIWMEKNIGIALDQMVPGHGTIPLSPYYFWPRKDAWEELKELLENKPWISQKQMIILLNQATDIINLWQQSGGNLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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