Glyma08g47960 - SoyBase

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Report for Sequence Feature Glyma08g47960

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46708376
stop:	46711407
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49210	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:19950093-19951464 FORWARD LENGTH=195	SoyBase	E_val: 3.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KZK5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KZK5_SOYBN	SoyBase	E_val: 3.00E-121	ISS
UniRef100_Q945P2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g49210/K21P3_8 n=1 Tax=Arabidopsis thaliana RepID=Q945P2_ARATH	SoyBase	E_val: 1.00E-49	ISS

Expression Patterns of Glyma08g47960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47960

Paralog	Evidence	Comments
Glyma18g53500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g364400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g47960

Limit To All Plant Sequences

>Glyma08g47960.2   sequence type=transcript   gene model=Glyma08g47960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTATAAGTGCATACCCTATTTTCTCACTTTTGAATTGCAATAGTTATCCTCTCAACATGTATGATTATGTTAGGATTAAAATTTGAAAAATATTTTTGAAAATTTCAATGCACAATAACAAATTTTAATGAAGCGTATAAAAGGAAGAGAAAGAAGTGAATGGTAGGATCTGTTGTTGTGTTGGGTAAGGTAAGGTAAGCATGTTCCGTTCATTGCTCCGCCGCCCGTTTTCGACGACGTCGGCGAGGGCGTTGAAGCACTGCGAGAACCACGAGTTTCTCTCTAAGAACTCGTTCCTGGGAAGCTGGGATGCGCCACGGGACCCCAAGGAGGCGGAGGCGAAGCTAACGCGTCTTCGAAGAGAATACGCATTGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAGGTCATGAAGATTGAGAAGGAGCGCAAGGACGAGGCTCGCAGGGAAGCACTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTCAGAGCGCAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAAGATGAAAGTCAAAATGCATGAAGAGAAGAAGGCTGAGAAGAAAGAGTTTCTGCACCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGTTGAAATAATGCATCTTTGAGCTCCTTGCAGTTCTACATTTGTATTGGTTGAGGGCTGTGTTATCTAGTTAGTAGAATTTGGTCCTATGTTTGAAACTGCCTCATAAAAATAGTTCTTGCATTTAGAGAATCACATTCCTGCTTTAGCCCATAGAATACGTTGGGTGTATTCACTGTTTTGCTTTTGGGATCAAGTTTTTTACTTGGCATGAGAATATTAAAAAAGATTGATATTTGAATCCAATAGCTAATAAGTGTCAATTGGCTTTATCTACAATGACTGAGTGGTAGGGAAACTATAATTGAGATCCTGGTTTGGCCTTATTGAGGGGTTTTGATGATAACACAAATCTGCGATCATAGAAAGAACAGCTGCTACTGCTATCGTGTATGGAACTTAGGGCAGAATGCCATTTCAAACCTAAAATGAAAACCATATGCACTGATTCTATGTTTGCCGTATGTTGACTTAATTGATATTTGATTCCCCATGGGGTGTGGGGAACCTCTTTCTTCTCTTTGGATTCTCTAGTGGTTTTATCCTAGTTGTTGAGGTTATGTGTGATGAGATGATTTCCAATTAGCTGGGTCTGAGTGTGTAGGCTTTTTGTCTTTTAGGTCTTGTGGAATTGAAAAACAGATTCAAGAGCTGTACAAGTGGGTATCAATATCTTTTTGAAGACTGATTGTGAAATTGAATTTCACTTGCCACTTAGTAGTCCTTGGGCATTAGACCCCCCCCCCACAATGTCTATCATGTTGTGATTCCACTGCTCCAATTATTTTCTGTACCGTCACTTGTGGTTGAGTTAATCATTCACAGAAGAACGGGGTTCTTTCAGAAGCAAAGGGTGGGGGTTGCTTTCTCAAGAGACCAGCCCCAGAAGGTTTATGTTGAGATCATAAGAAGAGGGAGCATAGCCTAGCATCAGCTTTTGAGGAAGGAAATTGTATCAAAAGAAAATGATGTGCATGCACTTGGCCAACGAAGACGGGATTTATAATTGTACAGTAATAAGGTCATATTCTCAACGTAGCTCTAATATAAATGCATTCCTAGAGTCATTTCTTAATAAGGAAACTATAATAATGCAAAGGTCAGCTTCTCATT

>Glyma08g47960.3   sequence type=transcript   gene model=Glyma08g47960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTATAAGTGCATACCCTATTTTCTCACTTTTGAATTGCAATAGTTATCCTCTCAACATGTATGATTATGTTAGGATTAAAATTTGAAAAATATTTTTGAAAATTTCAATGCACAATAACAAATTTTAATGAAGCGTATAAAAGGAAGAGAAAGAAGTGAATGGTAGGATCTGTTGTTGTGTTGGGTAAGGTAAGCATGTTCCGTTCATTGCTCCGCCGCCCGTTTTCGACGACGTCGGCGAGGGCGTTGAAGCACTGCGAGAACCACGAGTTTCTCTCTAAGAACTCGTTCCTGGGAAGCTGGGATGCGCCACGGGACCCCAAGGAGGCGGAGGCGAAGCTAACGCGTCTTCGAAGAGAATACGCATTGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAGGTCATGAAGATTGAGAAGGAGCGCAAGGACGAGGCTCGCAGGGAAGCACTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTCAGAGCGCAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAAGATGAAAGTCAAAATGCATGAAGAGAAGAAGGCTGAGAAGAAAGAGTTTCTGCACCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGTTGAAATAATGCATCTTTGAGCTCCTTGCAGTTCTACATTTGTATTGGTTGAGGGCTGTGTTATCTAGTTAGTAGAATTTGGTCCTATGTTTGAAACTGCCTCATAAAAATAGTTCTTGCATTTAGAGAATCACATTCCTGCTTTAGCCCATAGAATACGTTGGGTGTATTCACTGTTTTGCTTTTGGGATCAAGTTTTTTACTTGGCATGAGAATATTAAAAAAGATTGATATTTGAATCCAATAGCTAATAAGTGTCAATTGGCTTTATCTACAATGACTGAGTGGTAGGGAAACTATAATTGAGATCCTGGTTTGGCCTTATTGAGGGGTTTTGATGATAACACAAATCTGCGATCATAGAAAGAACAGCTGCTACTGCTATCGTGTATGGAACTTAGGGCAGAATGCCATTTCAAACCTAAAATGAAAACCATATGCACTGATTCTATGTTTGCCGTATGTTGACTTAATTGATATTTGATTCCCCATGGGGTGTGGGGAACCTCTTTCTTCTCTTTGGATTCTCTAGTGGTTTTATCCTAGTTGTTGAGGTTATGTGTGATGAGATGATTTCCAATTAGCTGGGTCTGAGTGTGTAGGCTTTTTGTCTTTTAGGTCTTGTGGAATTGAAAAACAGATTCAAGAGCTGTACAAGTGGGTATCAATATCTTTTTGAAGACTGATTGTGAAATTGAATTTCACTTGCCACTTAGTAGTCCTTGGGCATTAGACCCCCCCCCCACAATGTCTATCATGTTGTGATTCCACTGCTCCAATTATTTTCTGTACCGTCACTTGTGGTTGAGTTAATCATTCACAGAAGAACGGGGTTCTTTCAGAAGCAAAGGGTGGGGGTTGCTTTCTCAAGAGACCAGCCCCAGAAGGTTTATGTTGAGATCATAAGAAGAGGGAGCATAGCCTAGCATCAGCTTTTGAGGAAGGAAATTGTATCAAAAGAAAATGATGTGCATGCACTTGGCCAACGAAGACGGGATTTATAATTGTACAGTAATAAGGTCATATTCTCAACGTAGCTCTAATATAAATGCATTCCTAGAGTCATTTCTTAATAAGGAAACTATAATAATGCAAAGGTCAGCTTCTCATT

Coding sequences of Glyma08g47960

Limit To All Plant Sequences

>Glyma08g47960.1   sequence type=CDS   gene model=Glyma08g47960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCACCTCTCATTCGTGTTTTCTGCGAATTAGCATGTTCCGTTCATTGCTCCGCCGCCCGTTTTCGACGACGTCGGCGAGGGCGTTGAAGCACTGCGAGAACCACGAGTTTCTCTCTAAGAACTCGTTCCTGGGAAGCTGGGATGCGCCACGGGACCCCAAGGAGGCGGAGGCGAAGCTAACGCGTCTTCGAAGAGAATACGCATTGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAGGTCATGAAGATTGAGAAGGAGCGCAAGGACGAGGCTCGCAGGGAAGCACTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTCAGAGCGCAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAAGATGAAAGTCAAAATGCATGAAGAGAAGAAGGCTGAGAAGAAAGAGTTTCTGCACCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGTTGAAATAATGCATCTTTGA

>Glyma08g47960.2   sequence type=CDS   gene model=Glyma08g47960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCGTTCATTGCTCCGCCGCCCGTTTTCGACGACGTCGGCGAGGGCGTTGAAGCACTGCGAGAACCACGAGTTTCTCTCTAAGAACTCGTTCCTGGGAAGCTGGGATGCGCCACGGGACCCCAAGGAGGCGGAGGCGAAGCTAACGCGTCTTCGAAGAGAATACGCATTGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAGGTCATGAAGATTGAGAAGGAGCGCAAGGACGAGGCTCGCAGGGAAGCACTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTCAGAGCGCAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAAGATGAAAGTCAAAATGCATGAAGAGAAGAAGGCTGAGAAGAAAGAGTTTCTGCACCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGTTGAAATAATGCATCTTTGA

>Glyma08g47960.3   sequence type=CDS   gene model=Glyma08g47960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGGATCTGTTGTTGTGTTGGGTAAGGTAAGCATGTTCCGTTCATTGCTCCGCCGCCCGTTTTCGACGACGTCGGCGAGGGCGTTGAAGCACTGCGAGAACCACGAGTTTCTCTCTAAGAACTCGTTCCTGGGAAGCTGGGATGCGCCACGGGACCCCAAGGAGGCGGAGGCGAAGCTAACGCGTCTTCGAAGAGAATACGCATTGCAAGTGAAGGAGGTTCGGAAGGAATACATAAGAGAGATGGAGGTCATGAAGATTGAGAAGGAGCGCAAGGACGAGGCTCGCAGGGAAGCACTCAGAGTCGCCAACGAAGAGCGCAAGAAGCTCAAGGCTCAAGCCGCGCAGCTCAGAGCGCAGGAACGCGACATCGAACGACAACAGTTTCGAGAAACCCTATTAAAAGAAAGAGCAGAGAAACTTGAAAACTGGAAGATGAAAGTCAAAATGCATGAAGAGAAGAAGGCTGAGAAGAAAGAGTTTCTGCACCGACAAAGTTCGGCGTGGATTGAAGAAGGCAATCTTGAGAAAAAAGTTGTGGAAGCTATGGTTGAAATAATGCATCTTTGA

Predicted protein sequences of Glyma08g47960

Limit To All Plant Sequences

>Glyma08g47960.1   sequence type=predicted peptide   gene model=Glyma08g47960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTSHSCFLRISMFRSLLRRPFSTTSARALKHCENHEFLSKNSFLGSWDAPRDPKEAEAKLTRLRREYALQVKEVRKEYIREMEVMKIEKERKDEARREALRVANEERKKLKAQAAQLRAQERDIERQQFRETLLKERAEKLENWKMKVKMHEEKKAEKKEFLHRQSSAWIEEGNLEKKVVEAMVEIMHL*

>Glyma08g47960.2   sequence type=predicted peptide   gene model=Glyma08g47960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSLLRRPFSTTSARALKHCENHEFLSKNSFLGSWDAPRDPKEAEAKLTRLRREYALQVKEVRKEYIREMEVMKIEKERKDEARREALRVANEERKKLKAQAAQLRAQERDIERQQFRETLLKERAEKLENWKMKVKMHEEKKAEKKEFLHRQSSAWIEEGNLEKKVVEAMVEIMHL*

>Glyma08g47960.3   sequence type=predicted peptide   gene model=Glyma08g47960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGSVVVLGKVSMFRSLLRRPFSTTSARALKHCENHEFLSKNSFLGSWDAPRDPKEAEAKLTRLRREYALQVKEVRKEYIREMEVMKIEKERKDEARREALRVANEERKKLKAQAAQLRAQERDIERQQFRETLLKERAEKLENWKMKVKMHEEKKAEKKEFLHRQSSAWIEEGNLEKKVVEAMVEIMHL*

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