Glyma08g47920 - SoyBase

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Report for Sequence Feature Glyma08g47920

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46686037
stop:	46692564
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02530	AT	Annotation by Michelle Graham. TAIR10: TCP-1/cpn60 chaperonin family protein \| chr3:528806-532457 REVERSE LENGTH=535	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0044267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0359	KOG	Chaperonin complex component, TCP-1 zeta subunit (CCT6)	JGI		ISS
PTHR11353	Panther	CHAPERONIN	JGI		ISS
PTHR11353:SF21	Panther	CHAPERONIN CONTAINING T-COMPLEX PROTEIN 1, ZETA SUBUNIT, TCPZ	JGI		ISS
PF00118	PFAM	TCP-1/cpn60 chaperonin family	JGI		ISS
UniRef100_D9ZJC5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TCP domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJC5_MALDO	SoyBase	E_val: 0	ISS
UniRef100_I1KZK2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZK2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47920

Paralog	Evidence	Comments
Glyma18g53590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g364000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g47920

Limit To All Plant Sequences

>Glyma08g47920.1   sequence type=CDS   gene model=Glyma08g47920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTACGAGTGCTGAACCCTAACGCCGAAGTGCTGAACAAATCGGCGGCACTTCACATGAACATCAATGCCGCCAAGGGTTTGCAAGATGTCCTCAAAACCAACCTCGGTCCCAAAGGAACCATCAAAATGCTCGTTGGTGGTGCTGGTGATATCAAGCTTACCAAAGATGGCAACACTCTCTTGAAAGAGATGCAAATCCAAAACCCGACGGCGATTATGATTGCTAGAACGGCTGTGGCGCAGGATGATGCTAGTGGTGATGGCACCACTTCTACTGTCATCTTCATTGGCGAGCTTATGAAACAATCGGAGCGTTACATTGATGAAGGTATGCATCCTCGTGTGTTGGTTGATGGTTTTGATATTGCAAAGCGAGCAACTCTGCAATTCCTTGAAAAGTTTAAGACTCCTGTTGTGATGGGTGGTGAGCCTGATAAAGAGATTCTCAAGATGGTAGCAAGAACAACCGTCCGGACTAAGTTGTACGAATCACTTGCAGATCAATTGACAGATATAATTGTTGATGCAGTTTTATGTATTCAGAAGCCTGAGGAAGAAATTGATCTGTTTATGGTGGAGATCATGCATATGCGACACAAATTTGATGTTGACACACGCTTGGTTGAGGGTATTGTCCTTGATCATGGTTCTAGGCACCCTGACATGAAGCGACGTGCAGAAAACTGCTATATCTTGACATGTAATGTATCTTTGGAGTATGAGAAGAGTGAAGTAAACTCAGGCTTTTTCTACTCAAGTGCGGAACAGAGAGAAGCTATGGTTGCAGCTGAAAGACGACAGGTTGATGAAAAAGTTAAAAAAATCATTGAACTGAAGAATAAGGTTTGTTCTGGTAATGATAGCAATTTTGTTGTCCTCAATCAAAAAGGAATTGATCCCCCATCTCTGGACCTGCTTGCAAGGGAAGGAATAATTGCTCTTCGGAGAGCAAAGAGGAGAAACATGGAAAGATTGGTTTTGGCCTGTGGAGGGGAGGCAGTAAACTCTGTAGATGATTTGACTCCTGAATGTCTGGGTTGGGCAGGATTGGTATATGAACATGTCCTTGGTGAAGAGAAATATACATTCGTAGAAAATGTTAAGAATCCTTTTTCCTGCACAATCTTGATTAAAGGTCCTAATGACCATACAATAGCTCAGATTAAAGATGCTGTTCGTGATGGTTTGAGGGCTGTTAAGAATACCCTTGAAGATGAATCTGTTGTCTTAGGTGCTGGTGCATTTGAAGTTGCTGCTAGACAATATCTGATGAATGAAGTTAAGAAAACAGTTCAAGGGCGTGCACAACTTGGTGTTGAGGCTTTTGCTGATGCACTTCTTGTGGTGCCTAAGACACTTGCTGAAAACTCTGGGCTTGACACTCAAGATGTGATTATTGCCCTTACGGGAGAGCATGACAAAGGGAATATTGTGGGGTTGAGCCTGAACACAGGAGAACCTATAGACCCTGCAATGGAGGGTATTTTTGACAACTACTCTGTGAAGCGCCAAATTATAAACTCAGGGCCAGTTATAGTATCTCAGTTACTGGTGGTGGACGAAGTAATTCGTGCTGGACGTAACATGCGGAAGCCAACTTAA

Predicted protein sequences of Glyma08g47920

Limit To All Plant Sequences

>Glyma08g47920.1   sequence type=predicted peptide   gene model=Glyma08g47920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDASGDGTTSTVIFIGELMKQSERYIDEGMHPRVLVDGFDIAKRATLQFLEKFKTPVVMGGEPDKEILKMVARTTVRTKLYESLADQLTDIIVDAVLCIQKPEEEIDLFMVEIMHMRHKFDVDTRLVEGIVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNSGFFYSSAEQREAMVAAERRQVDEKVKKIIELKNKVCSGNDSNFVVLNQKGIDPPSLDLLAREGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPECLGWAGLVYEHVLGEEKYTFVENVKNPFSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTLEDESVVLGAGAFEVAARQYLMNEVKKTVQGRAQLGVEAFADALLVVPKTLAENSGLDTQDVIIALTGEHDKGNIVGLSLNTGEPIDPAMEGIFDNYSVKRQIINSGPVIVSQLLVVDEVIRAGRNMRKPT*

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