Glyma08g47900 - SoyBase

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Report for Sequence Feature Glyma08g47900

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46677579
stop:	46680884
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02520	AT	Annotation by Michelle Graham. TAIR10: general regulatory factor 7 \| chr3:526800-527915 REVERSE LENGTH=265	SoyBase	E_val: 1.00E-160	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0019904	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein domain specific binding	SoyBase	N/A	ISS
GO:0045309	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein phosphorylated amino acid binding	SoyBase	N/A	ISS
KOG0841	KOG	Multifunctional chaperone (14-3-3 family)	JGI		ISS
PTHR18860	Panther	14-3-3	JGI		ISS
PF00244	PFAM	14-3-3 protein	JGI		ISS
UniRef100_E9KNA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SGF14a n=1 Tax=Glycine max RepID=E9KNA6_SOYBN	SoyBase	E_val: 1.00E-172	ISS
UniRef100_I1KZK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZK0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47900

Paralog	Evidence	Comments
Glyma18g53610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g363800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g47900

Limit To All Plant Sequences

>Glyma08g47900.2   sequence type=transcript   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATAATTTTTGTTGTTGTTGATTATATTCAAAACCGAGAGAGTAGCCTTTTTACACGCCAAAGAGAATCTGAAATACTAAGAAAACACAAGAAAGGCAAAGCAGACATGAAAAGCATGTCAGCGTGAAGTGCGACGGCAGGCTAGGCCCCACCACCTAACAAGACAAACTCAACAACGGTCAACGCTTCCCACTTCTCACGGAATCCCCGCCACCCACCACGTGCCATCTTCTCATTGGACCTCCCCCTTCTTCATCTCCTCTCCTATATCTACGCCTTCAATTCTCTTCCATTTTGCTACGCTTTCTTTTCCTTCAGGGTTAAGCGGTGAGATTTGCGAATCTGAGAAATGGCGGATTCTTCTCGGGAGGAGAACGTTTACATGGCGAAATTGGCGGAGCAGGCCGAGCGTTACGAGGAGATGGTTGAGTTCATGGAGAAGGTTGCAAAGACTGTGGAGGTTGAGGAGTTGACGGTGGAGGAGAGGAATCTCCTCTCTGTGGCTTACAAGAACGTGATTGGTGCGAGGAGGGCTTCGTGGAGGATCATATCCTCCATTGAGCAGAAGGAGGAGAGCAGGGGCAATGAGGACCACGTGGCCATTATAAAGGAGTACAGGGGCAAAATTGAGGCTGAACTCAGCAAGATCTGTGATGGGATTTTGAACCTCCTTGAGTCCAACCTCATTCCTTCCGCTGCATCTCCCGAGAGCAAAGTCTTTTACCTTAAAATGAAGGGTGATTACCACAGGTACCTTGCTGAGTTCAAGACCGGGGCAGAGAGGAAAGAGGCTGCAGAGAGTACTTTGCTTGCTTACAAATCCGCTCAGGATATTGCTCTTGCTGACTTGGCCCCCACTCACCCCATTAGGTTGGGACTTGCTCTCAACTTTTCTGTGTTCTATTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCCAAGCAGGCATTTGATGAGGCAATTTCCGAGCTTGACACATTGGGTGAAGAGTCATACAAAGATAGTACATTGATCATGCAACTTCTCCGTGACAATCTGACTTTGTGGACATCAGACATCACGGACGATGCTGGAGATGAGATCAAGGAAACATCTAAGCAACAACCAGGCGAATAGGCGATGGCAGTTGCGATGTGGTAGTTGATTGGATATGTATTACCGATAATATGGATCCAATGTGGCTTGCCATAGTGGGATTATTGTATTAATGAATTTTATGATTTCAAGTGCGCGTTGCGCTTGGGATTTACAATGTTTCAGTGGATTGTCTAATGTGTTTTATGGATGAGAAGAATGTGGTTTAGTGATTTATAAATTTTTTATTGTTGCTAGTAGCGTTTTTGTGAGATTCATTTTTCATTTGATGTTGTTTGTTTATGCTCCTAAATCACTTGCTGAGCACAGGCCGTGACATACTCCCTCCATCCTGTAATAAATCTTCGTGTGTAAGGAGAAAAAATGAGTTTCAAAATACTTGTCATTTACTCATTTTAGCTTTCAATGTTATTTTCTTTTTTCACTCATTTCTTATAATATTATTGATGAAGAACAAAAATT

>Glyma08g47900.3   sequence type=transcript   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTCATCATCTCTTTTTAGGGTTTCGATTGCGCCTATTCTTTTCTCATTTTTGTTTCTCCTAGGGTTAAGCGGTGAGATTTGCGAATCTGAGAAATGGCGGATTCTTCTCGGGAGGAGAACGTTTACATGGCGAAATTGGCGGAGCAGGCCGAGCGTTACGAGGAGATGGTTGAGTTCATGGAGAAGGTTGCAAAGACTGTGGAGGTTGAGGAGTTGACGGTGGAGGAGAGGAATCTCCTCTCTGTGGCTTACAAGAACGTGATTGGTGCGAGGAGGGCTTCGTGGAGGATCATATCCTCCATTGAGCAGAAGGAGGAGAGCAGGGGCAATGAGGACCACGTGGCCATTATAAAGGAGTACAGGGGCAAAATTGAGGCTGAACTCAGCAAGATCTGTGATGGGATTTTGAACCTCCTTGAGTCCAACCTCATTCCTTCCGCTGCATCTCCCGAGAGCAAAGTCTTTTACCTTAAAATGAAGGGTGATTACCACAGGTACCTTGCTGAGTTCAAGACCGGGGCAGAGAGGAAAGAGGCTGCAGAGAGTACTTTGCTTGCTTACAAATCCGCTCAGGATATTGCTCTTGCTGACTTGGCCCCCACTCACCCCATTAGGTTGGGACTTGCTCTCAACTTTTCTGTGTTCTATTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCCAAGCAGGCATTTGATGAGGCAATTTCCGAGCTTGACACATTGGGTGAAGAGTCATACAAAGATAGTACATTGATCATGCAACTTCTCCGTGACAATCTGACTTTGTGGACATCAGACATCACGGACGATGCTGGAGATGAGATCAAGGAAACATCTAAGCAACAACCAGGCGAATAGGCGATGGCAGTTGCGATGTGGTAGTTGATTGGATATGTATTACCGATAATATGGATCCAATGTGGCTTGCCATAGTGGGATTATTGTATTAATGAATTTTATGATTTCAAGTGCGCGTTGCGCTTGGGATTTACAATGTTTCAGTGGATTGTCTAATGTGTTTTATGGATGAGAAGAATGTGGTTTAGTGATTTATAAATTTTTTATTGTTGCTAGTAGCGTTTTTGTGAGATTCATTTTTCATTTGATGTTGTTTGTTTATGCTCCTAAATCACTTGCTGAGCACAGGCCGTGACATACTCCCTCCATCCTGTAATAAATCTTCGTGTGTAAGGAGAAAAAATGAGTTTCAAAATACTTGTCATTTACTCATTTTAGCTTTCAATGTTATTTTCTTTTTTCACTCATTTCTTATAATATTATTGATGAAGAACAAAAATT

>Glyma08g47900.4   sequence type=transcript   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATGAATTGCGTAATATTGTGAAATTTATCTTGCAGGGTTAAGCGGTGAGATTTGCGAATCTGAGAAATGGCGGATTCTTCTCGGGAGGAGAACGTTTACATGGCGAAATTGGCGGAGCAGGCCGAGCGTTACGAGGAGATGGTTGAGTTCATGGAGAAGGTTGCAAAGACTGTGGAGGTTGAGGAGTTGACGGTGGAGGAGAGGAATCTCCTCTCTGTGGCTTACAAGAACGTGATTGGTGCGAGGAGGGCTTCGTGGAGGATCATATCCTCCATTGAGCAGAAGGAGGAGAGCAGGGGCAATGAGGACCACGTGGCCATTATAAAGGAGTACAGGGGCAAAATTGAGGCTGAACTCAGCAAGATCTGTGATGGGATTTTGAACCTCCTTGAGTCCAACCTCATTCCTTCCGCTGCATCTCCCGAGAGCAAAGTCTTTTACCTTAAAATGAAGGGTGATTACCACAGGTACCTTGCTGAGTTCAAGACCGGGGCAGAGAGGAAAGAGGCTGCAGAGAGTACTTTGCTTGCTTACAAATCCGCTCAGGATATTGCTCTTGCTGACTTGGCCCCCACTCACCCCATTAGGTTGGGACTTGCTCTCAACTTTTCTGTGTTCTATTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCCAAGCAGGCATTTGATGAGGCAATTTCCGAGCTTGACACATTGGGTGAAGAGTCATACAAAGATAGTACATTGATCATGCAACTTCTCCGTGACAATCTGACTTTGTGGACATCAGACATCACGGACGATGCTGGAGATGAGATCAAGGAAACATCTAAGCAACAACCAGGCGAATAGGCGATGGCAGTTGCGATGTGGTAGTTGATTGGATATGTATTACCGATAATATGGATCCAATGTGGCTTGCCATAGTGGGATTATTGTATTAATGAATTTTATGATTTCAAGTGCGCGTTGCGCTTGGGATTTACAATGTTTCAGTGGATTGTCTAATGTGTTTTATGGATGAGAAGAATGTGGTTTAGTGATTTATAAATTTTTTATTGTTGCTAGTAGCGTTTTTGTGAGATTCATTTTTCATTTGATGTTGTTTGTTTATGCTCCTAAATCACTTGCTGAGCACAGGCCGTGACATACTCCCTCCATCCTGTAATAAATCTTCGTGTGTAAGGAGAAAAAATGAGTTTCAAAATACTTGTCATTTACTCATTTTAGCTTTCAATGTTATTTTCTTTTTTCACTCATTTCTTATAATATTATTGATGAAGAACAAAAATT

Coding sequences of Glyma08g47900

Limit To All Plant Sequences

>Glyma08g47900.1   sequence type=CDS   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATTCTTCTCGGGAGGAGAACGTTTACATGGCGAAATTGGCGGAGCAGGCCGAGCGTTACGAGGAGATGGTTGAGTTCATGGAGAAGGTTGCAAAGACTGTGGAGGTTGAGGAGTTGACGGTGGAGGAGAGGAATCTCCTCTCTGTGGCTTACAAGAACGTGATTGGTGCGAGGAGGGCTTCGTGGAGGATCATATCCTCCATTGAGCAGAAGGAGGAGAGCAGGGGCAATGAGGACCACGTGGCCATTATAAAGGAGTACAGGGGCAAAATTGAGGCTGAACTCAGCAAGATCTGTGATGGGATTTTGAACCTCCTTGAGTCCAACCTCATTCCTTCCGCTGCATCTCCCGAGAGCAAAGTCTTTTACCTTAAAATGAAGGGTGATTACCACAGGTACCTTGCTGAGTTCAAGACCGGGGCAGAGAGGAAAGAGGCTGCAGAGAGTACTTTGCTTGCTTACAAATCCGCTCAGGATATTGCTCTTGCTGACTTGGCCCCCACTCACCCCATTAGGTTGGGACTTGCTCTCAACTTTTCTGTGTTCTATTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCCAAGCAGGCATTTGATGAGGCAATTTCCGAGCTTGACACATTGGGTGAAGAGTCATACAAAGATAGTACATTGATCATGCAACTTCTCCGTGACAATCTGACTTTGTGGACATCAGACATCACGGTTTCTTTCTCTCTCTCTATTTCTCTCTTATTGTATATTGTAAATATTTCTTTATGTGTTTAA

>Glyma08g47900.2   sequence type=CDS   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATTCTTCTCGGGAGGAGAACGTTTACATGGCGAAATTGGCGGAGCAGGCCGAGCGTTACGAGGAGATGGTTGAGTTCATGGAGAAGGTTGCAAAGACTGTGGAGGTTGAGGAGTTGACGGTGGAGGAGAGGAATCTCCTCTCTGTGGCTTACAAGAACGTGATTGGTGCGAGGAGGGCTTCGTGGAGGATCATATCCTCCATTGAGCAGAAGGAGGAGAGCAGGGGCAATGAGGACCACGTGGCCATTATAAAGGAGTACAGGGGCAAAATTGAGGCTGAACTCAGCAAGATCTGTGATGGGATTTTGAACCTCCTTGAGTCCAACCTCATTCCTTCCGCTGCATCTCCCGAGAGCAAAGTCTTTTACCTTAAAATGAAGGGTGATTACCACAGGTACCTTGCTGAGTTCAAGACCGGGGCAGAGAGGAAAGAGGCTGCAGAGAGTACTTTGCTTGCTTACAAATCCGCTCAGGATATTGCTCTTGCTGACTTGGCCCCCACTCACCCCATTAGGTTGGGACTTGCTCTCAACTTTTCTGTGTTCTATTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCCAAGCAGGCATTTGATGAGGCAATTTCCGAGCTTGACACATTGGGTGAAGAGTCATACAAAGATAGTACATTGATCATGCAACTTCTCCGTGACAATCTGACTTTGTGGACATCAGACATCACGGACGATGCTGGAGATGAGATCAAGGAAACATCTAAGCAACAACCAGGCGAATAG

>Glyma08g47900.3   sequence type=CDS   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATTCTTCTCGGGAGGAGAACGTTTACATGGCGAAATTGGCGGAGCAGGCCGAGCGTTACGAGGAGATGGTTGAGTTCATGGAGAAGGTTGCAAAGACTGTGGAGGTTGAGGAGTTGACGGTGGAGGAGAGGAATCTCCTCTCTGTGGCTTACAAGAACGTGATTGGTGCGAGGAGGGCTTCGTGGAGGATCATATCCTCCATTGAGCAGAAGGAGGAGAGCAGGGGCAATGAGGACCACGTGGCCATTATAAAGGAGTACAGGGGCAAAATTGAGGCTGAACTCAGCAAGATCTGTGATGGGATTTTGAACCTCCTTGAGTCCAACCTCATTCCTTCCGCTGCATCTCCCGAGAGCAAAGTCTTTTACCTTAAAATGAAGGGTGATTACCACAGGTACCTTGCTGAGTTCAAGACCGGGGCAGAGAGGAAAGAGGCTGCAGAGAGTACTTTGCTTGCTTACAAATCCGCTCAGGATATTGCTCTTGCTGACTTGGCCCCCACTCACCCCATTAGGTTGGGACTTGCTCTCAACTTTTCTGTGTTCTATTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCCAAGCAGGCATTTGATGAGGCAATTTCCGAGCTTGACACATTGGGTGAAGAGTCATACAAAGATAGTACATTGATCATGCAACTTCTCCGTGACAATCTGACTTTGTGGACATCAGACATCACGGACGATGCTGGAGATGAGATCAAGGAAACATCTAAGCAACAACCAGGCGAATAG

>Glyma08g47900.4   sequence type=CDS   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATTCTTCTCGGGAGGAGAACGTTTACATGGCGAAATTGGCGGAGCAGGCCGAGCGTTACGAGGAGATGGTTGAGTTCATGGAGAAGGTTGCAAAGACTGTGGAGGTTGAGGAGTTGACGGTGGAGGAGAGGAATCTCCTCTCTGTGGCTTACAAGAACGTGATTGGTGCGAGGAGGGCTTCGTGGAGGATCATATCCTCCATTGAGCAGAAGGAGGAGAGCAGGGGCAATGAGGACCACGTGGCCATTATAAAGGAGTACAGGGGCAAAATTGAGGCTGAACTCAGCAAGATCTGTGATGGGATTTTGAACCTCCTTGAGTCCAACCTCATTCCTTCCGCTGCATCTCCCGAGAGCAAAGTCTTTTACCTTAAAATGAAGGGTGATTACCACAGGTACCTTGCTGAGTTCAAGACCGGGGCAGAGAGGAAAGAGGCTGCAGAGAGTACTTTGCTTGCTTACAAATCCGCTCAGGATATTGCTCTTGCTGACTTGGCCCCCACTCACCCCATTAGGTTGGGACTTGCTCTCAACTTTTCTGTGTTCTATTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCCAAGCAGGCATTTGATGAGGCAATTTCCGAGCTTGACACATTGGGTGAAGAGTCATACAAAGATAGTACATTGATCATGCAACTTCTCCGTGACAATCTGACTTTGTGGACATCAGACATCACGGACGATGCTGGAGATGAGATCAAGGAAACATCTAAGCAACAACCAGGCGAATAG

Predicted protein sequences of Glyma08g47900

Limit To All Plant Sequences

>Glyma08g47900.1   sequence type=predicted peptide   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVEVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYRGKIEAELSKICDGILNLLESNLIPSAASPESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITVSFSLSISLLLYIVNISLCV*

>Glyma08g47900.2   sequence type=predicted peptide   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVEVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYRGKIEAELSKICDGILNLLESNLIPSAASPESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAGDEIKETSKQQPGE*

>Glyma08g47900.3   sequence type=predicted peptide   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVEVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYRGKIEAELSKICDGILNLLESNLIPSAASPESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAGDEIKETSKQQPGE*

>Glyma08g47900.4   sequence type=predicted peptide   gene model=Glyma08g47900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVEVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYRGKIEAELSKICDGILNLLESNLIPSAASPESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAGDEIKETSKQQPGE*

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