SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29880 | AT | Annotation by Michelle Graham. TAIR10: glycyl-tRNA synthetase / glycine--tRNA ligase | chr1:10459662-10462781 REVERSE LENGTH=729 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation | SoyBase | N/A | ISS |
| GO:0006426 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0004820 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG2298 | KOG | Glycyl-tRNA synthetase and related class II tRNA synthetase | JGI | ISS | |
| PTHR10745 | Panther | GLYCYL-TRNA SYNTHETASE | JGI | ISS | |
| PF00458 | PFAM | WHEP-TRS domain | JGI | ISS | |
| PF00587 | PFAM | tRNA synthetase class II core domain (G, H, P, S and T) | JGI | ISS | |
| PF03129 | PFAM | Anticodon binding domain | JGI | ISS | |
| UniRef100_I1KZJ9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZJ9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O23627 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycine--tRNA ligase 1, mitochondrial n=3 Tax=Arabidopsis thaliana RepID=SYGM1_ARATH | SoyBase | E_val: 0 | ISS |
|
Glyma08g47890 not represented in the dataset |
Glyma08g47890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g363700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g47890.1 sequence type=CDS gene model=Glyma08g47890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGAAGCATTTAGTGAGAGTGAGAGCGATAGCAAAAACAGCAATATCTTCTTCCTTCCCTAAGCCTAAAAATAAAATATCTTGTCATTCAATTCCACTCACATTCGCCATATCGTCTTCTCCCATGGCCGCCACCGATGAATCCCTCCGCAAATCCCTCGCCGAGAAGCACGCCGCAGTGGAAGCCCAAGGCAACGCCGTCCGCGCCCTCAAGGCCGCCAAAGCCGCCAAACCCGAAATCGACGCCGCAATCGAAGCCCTAAACGCGCTGAAGCTCGAAAAAAGCTCCATCGAGCACTCCCTCCTCGGCGGCTCCGACAGCCGCGAGGCCTTCCGTCAGTCCGTGGTGAACACCCTTGAACGGCGCCTCTTCTACATCCCCTCCTTCAAGATCTACCGCGGCGTCGCCGGCCTCTTCGACTACGGCCCTCCCGGCTGCTCCGTCAAGTCCAACGTGCTCTCGTTCTGGCGCCAACACTTCGTCCTGGAAGAGAACATGCTCGAAGTCGATTGCCCCTGCGTCACTCCCGAAATCGTTCTCAAGGCCTCTGGGCACGTGGACAAATTCACCGATCTCATGGTCAAAGACGAGAAGACCGGCACGTGCTACCGCGCCGATCACCTGCTCAAGGACTTCTGCAACGACAAGCTCCAGCGTGACCTTGCGTTGTCTTCTGATAAGGTTGCGGAGCTTAAGCACGTGCTTGCCATGCTGGATGATTTCTCTGCTGAAGAGCTTGGTGCCAAGATTAAGGACTATGGGATTGTTTCTCCTGAGACTAAGAACTCTCTCTCTGATCCCTACCCTTTCAATTTGATGTTTCAGACTTCCATTGGTCCCTCCGGCTTCAGCCCTGGCTTTATGAGACCCGAGACTGCCCAGGGCATTTTCGTCAATTTTAAGGATTTGTATTATTACAATGGCAACAAGCTTCCTTTCGCTGCTGCGCAGATTGGCCAAGCGTTTAGGAATGAGATATCTCCACGACAGGGGCTTCTGAGAGTGCGGGAGTTCACGTTGGCGGAGATTGAGCACTTTGTTGACCCTCTAGATAAGTCTCATCCCAAGTACCCTGAGGTAGCTGACTTGGAGTTCTTGATGTTCCCGAGGGAGGAGCAAATGTCGGGTCAGTCTGCCAAGAGGATTCCTCTTCGTGATGCTGTTTCCAAGGGAATTGTCAACAATGAGACACTTGGTTACTTCATCGGGAGAGTGTATCTATTCTTGACGCGTCTTGGTATAGACAAGGACCGATTGAGGTTTAGGCAACATCTCGCCAATGAGATGGCCCACTATGCTGCTGACTGTTGGGATGCCGAGATTGAGTGCTCCTATGGTTGGATTGAGTGTGTTGGCATTGCCGATAGATCTGCATATGATTTGCGTGCTCACTCGGATAAAAGTGGTGTTCCGTTAGTGGCTCATGAAAAATTTGCAGAACCTAAGGAAGTGGAGAAATTGGTTATAACTCCAGTAAAGAAAGAGCTGGGTCTGGCATTCAAGGGGAACCAGAGGATGGTGGTTGAAGCACTTGAGGCAATGGCTGAGAAAGAAGCTTTGGATATGAAGGCTGCTCTGGAGTCAAAAGGGGAGGTGGAGTTTCAAGTGTGTACACTTGGGAAAAATGTGACTATTAAGAAGAGTATGCTGACCATTCAAAAGGAGATAAAGAAAGAGCACCAGCGAGTTTTTACACCATCTGTGATTGAACCATCATTTGGAATTGGACGTATAATCTATTGCCTCTTTGAGCACACATTCTACACGAGGCCAAGCAAAGCTGGGGATGAACAGTTAAATGTATTTCGTTTCCCTTCACTTGTAGCCCCTATTAAGTGTACAGTTTTCCCACTGGTTCAGAATCAGAAGTATGAGGAGGTTGCCAAACTCATTTCCAAGTCATTGACTGCTGTTGGAATTTCACACAAGATTGACACTACAGGTACATCAATAGGAAAACGATATGCAAGAACAGATGAACTTGGCGTGCCCTTTGCTATCACTGTAGATTCAACATCATCAGTGACTATTCGGGAGAGGGACAGCAAGGATCAAGTGCGTGTTGATGTGGATAAAGCTGCCTCTGTTGTTAGGGAGGTGACTGAAGGCCAGAGGACATGGGAAGATGTGTGGTCAACTTTTCCTCATCATTCCTCTACATCTGCAGATGAATGA
>Glyma08g47890.1 sequence type=predicted peptide gene model=Glyma08g47890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLKHLVRVRAIAKTAISSSFPKPKNKISCHSIPLTFAISSSPMAATDESLRKSLAEKHAAVEAQGNAVRALKAAKAAKPEIDAAIEALNALKLEKSSIEHSLLGGSDSREAFRQSVVNTLERRLFYIPSFKIYRGVAGLFDYGPPGCSVKSNVLSFWRQHFVLEENMLEVDCPCVTPEIVLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDFCNDKLQRDLALSSDKVAELKHVLAMLDDFSAEELGAKIKDYGIVSPETKNSLSDPYPFNLMFQTSIGPSGFSPGFMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPLDKSHPKYPEVADLEFLMFPREEQMSGQSAKRIPLRDAVSKGIVNNETLGYFIGRVYLFLTRLGIDKDRLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSDKSGVPLVAHEKFAEPKEVEKLVITPVKKELGLAFKGNQRMVVEALEAMAEKEALDMKAALESKGEVEFQVCTLGKNVTIKKSMLTIQKEIKKEHQRVFTPSVIEPSFGIGRIIYCLFEHTFYTRPSKAGDEQLNVFRFPSLVAPIKCTVFPLVQNQKYEEVAKLISKSLTAVGISHKIDTTGTSIGKRYARTDELGVPFAITVDSTSSVTIRERDSKDQVRVDVDKAASVVREVTEGQRTWEDVWSTFPHHSSTSADE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
