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Report for Sequence Feature Glyma08g47870

Feature Type:gene_model
Chromosome:Gm08
Start:46649805
stop:46650527
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g47870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATCG00300AT Annotation by Michelle Graham. TAIR10: YCF9 | chrC:35751-35939 FORWARD LENGTH=62 SoyBaseE_val: 7.00E-28ISS
GO:0006091GO-bp Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy SoyBaseN/AISS
GO:0006354GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0042549GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II stabilization SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009523GO-cc Annotation by Michelle Graham. GO Cellular Compartment: photosystem II SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009539GO-cc Annotation by Michelle Graham. GO Cellular Compartment: photosystem II reaction center SoyBaseN/AISS
GO:0030095GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast photosystem II SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF01737PFAM YCF9 JGI ISS
UniRef100_I1KZJ7UniRef Annotation by Michelle Graham. Best UniRef hit: Photosystem II reaction center protein Z n=1 Tax=Glycine max RepID=I1KZJ7_SOYBN SoyBaseE_val: 3.00E-31ISS
UniRef100_I1KZJ7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Photosystem II reaction center protein Z n=1 Tax=Glycine max RepID=I1KZJ7_SOYBN SoyBaseE_val: 3.00E-31ISS

Expression Patterns of Glyma08g47870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g47870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g363500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g47870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g47870
>Glyma08g47870.1   sequence type=CDS   gene model=Glyma08g47870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTATTGCTTTCCAATTAGTTATTTTTGCATTAATTGTTATTTCATTTATTTTATTGATTAGTGTACCTGTTGTATTTGCTTCTCCTAAAGGTTGGTCGAATAACAAAAATGTTGTATTTTTCGGTACATCATTATGGATTGGATTAGTGTTTCTCGTGGGTATTTTTAATTCTCTCATTTCTTGA
Predicted protein sequences of Glyma08g47870
>Glyma08g47870.1   sequence type=predicted peptide   gene model=Glyma08g47870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIIAFQLVIFALIVISFILLISVPVVFASPKGWSNNKNVVFFGTSLWIGLVFLVGIFNSLIS*






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