Glyma08g47850 - SoyBase

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Report for Sequence Feature Glyma08g47850

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46641252
stop:	46644833
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G44960	AT	Annotation by Michelle Graham. TAIR10: SNARE associated Golgi protein family \| chr1:16999576-17001447 FORWARD LENGTH=261	SoyBase	E_val: 1.00E-102	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PTHR12677	Panther	UNCHARACTERIZED	JGI		ISS
PF09335	PFAM	SNARE associated Golgi protein	JGI		ISS
UniRef100_I1KZJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZJ6_SOYBN	SoyBase	E_val: 3.00E-168	ISS
UniRef100_Q9MAL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F27F5.5 n=2 Tax=Arabidopsis thaliana RepID=Q9MAL1_ARATH	SoyBase	E_val: 1.00E-99	ISS

Expression Patterns of Glyma08g47850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47850

Paralog	Evidence	Comments
Glyma18g53640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g363400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g47850

Limit To All Plant Sequences

>Glyma08g47850.1   sequence type=CDS   gene model=Glyma08g47850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCGGGGTTGGTGGTGGAAAGTGGCGGTGTTGGCGGTGGTAGTGGCGGTGGTGTGGAGAGGGTGGCAGGTGGGTGGATTGGAGAAGGAGTCAGCGTTCAATTTTGTCAGAGAATGGTCGGAGAAGTTAGGGATTTGGGCGATCCCTCTCTACGTGTCGCTCCACACCGTCTCCATCGCTCTGTGTTTACCCTCTGCGATCTTCTTCGAAACCGCCGCTCCTCTCCTCTTCGGTTTCTTACCTTCCGTCTTCTGCGTCTTCTCCGCCAAAATCCTCGCAGCGTCACTCTCCTTCTCCATCGGCAGGCTGGTATTCAGGAGTTCAAGCTCAGCAATGGAGTGGGCCCAAAGAAACAGATACTTTCATTTAATCTCTAGAGGAGTTGAGCGAGATGGTTGGAAATTTGTTCTTCTTGCCCGCTTCTCGCCTGTGCCCTCTTATGTTATTAACTATACCTTAGCGGCTACTGATGTTAGGTTCCTTTTGGATTTTTTTCTTCCTACTGCTATTGGATGTCTCCCCATGATCTTGCAAAATACATCTATTGGAAGCCTTGCTGGTGCTGCTGTTGCTTCAGCCTCTGGCTCTAAGAAATCTCAAATTTGGTCCTACTTTTTTCCTGTAGTTGGTATTTTGTCTAGTGTAGTTATTTCTTTGAGAATTAAAAAGTATTCAACCCAAGTTTCAGTATCTGAAATCCCCCCCAAGCAAAACTAA

Predicted protein sequences of Glyma08g47850

Limit To All Plant Sequences

>Glyma08g47850.1   sequence type=predicted peptide   gene model=Glyma08g47850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGWWWKVAVLAVVVAVVWRGWQVGGLEKESAFNFVREWSEKLGIWAIPLYVSLHTVSIALCLPSAIFFETAAPLLFGFLPSVFCVFSAKILAASLSFSIGRLVFRSSSSAMEWAQRNRYFHLISRGVERDGWKFVLLARFSPVPSYVINYTLAATDVRFLLDFFLPTAIGCLPMILQNTSIGSLAGAAVASASGSKKSQIWSYFFPVVGILSSVVISLRIKKYSTQVSVSEIPPKQN*

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