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Report for Sequence Feature Glyma08g47816

Feature Type:gene_model
Chromosome:Gm08
Start:46616029
stop:46616583
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g47816
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65480AT Annotation by Michelle Graham. TAIR10: PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:24331510-24333689 FORWARD LENGTH=175 SoyBaseE_val: 3.00E-40ISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009911GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development SoyBaseN/AISS
GO:0010119GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008429GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphatidylethanolamine binding SoyBaseN/AISS
PTHR11362Panther PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN JGI ISS
PF01161PFAM Phosphatidylethanolamine-binding protein JGI ISS
UniRef100_G7Z0A7UniRef Annotation by Michelle Graham. Best UniRef hit: Flowering locus T-like protein 7 n=1 Tax=Glycine max RepID=G7Z0A7_SOYBN SoyBaseE_val: 6.00E-58ISS
UniRef100_G7Z0A7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Flowering locus T-like protein 7 n=1 Tax=Glycine max RepID=G7Z0A7_SOYBN SoyBaseE_val: 6.00E-58ISS

Expression Patterns of Glyma08g47816
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g47816 not represented in the dataset
Glyma08g47816 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g47816 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g47816
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g47816
>Glyma08g47816.1   sequence type=CDS   gene model=Glyma08g47816   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGTAACCAATATTCCAGCGACTACAAGTGCAAGCTTTGGACAAGAGGTTGTGAGCTATGAAAGTCCACGACCAACATCAGGGATTCATCGTTTCATATTTGTGTTGTTTCGTCAACCGAGAAGAATGTCTATACCTGCTCCAGGATGGCGCCAAAATTTCATCACTAGAGATTTTGCAGAGTATTATAATCTTGGCTTACCAGTTGCTGCTGTCTATTTCAATTGTCAACGACAAGGTGGTTCTGGGGGAAGGAGGCTAATGTTATAA
Predicted protein sequences of Glyma08g47816
>Glyma08g47816.1   sequence type=predicted peptide   gene model=Glyma08g47816   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LVTNIPATTSASFGQEVVSYESPRPTSGIHRFIFVLFRQPRRMSIPAPGWRQNFITRDFAEYYNLGLPVAAVYFNCQRQGGSGGRRLML*






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