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Report for Sequence Feature Glyma08g47790

Feature Type:gene_model
Chromosome:Gm08
Start:46591084
stop:46595539
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13420AT Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein | chr5:4302080-4304212 REVERSE LENGTH=438 SoyBaseE_val: 0ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0009060GO-bp Annotation by Michelle Graham. GO Biological Process: aerobic respiration SoyBaseN/AISS
GO:0009809GO-bp Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process SoyBaseN/AISS
GO:0033587GO-bp Annotation by Michelle Graham. GO Biological Process: shikimate biosynthetic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004801GO-mf Annotation by Michelle Graham. GO Molecular Function: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity SoyBaseN/AISS
KOG2772 KOG Transaldolase JGI ISS
PTHR10683Panther TRANSALDOLASE JGI ISS
PF00923PFAM Transaldolase JGI ISS
UniRef100_G7KXR2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transaldolase n=1 Tax=Medicago truncatula RepID=G7KXR2_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KZJ0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZJ0_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g53700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g362900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g47790.2   sequence type=transcript   gene model=Glyma08g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAACGAAAAGGTGCACCAACTTTCCCTCTACCAAATCTCATAAAAACTAATAAGTTAATATCATGATATAAATCGAACCACCTACTTGGTGTCTTGCAATTCCCAATGGCCTCCATTTTCAAGCTCTCAACGCCATCTCCAGCTGCTTCCTTATCAGAAGCGCTTCGCCCCAGAGATTCTCGCTTCCTCTCCTTCAATCCTTCTTCCAACGCTATTAATTACAAAATTAACCTCTCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGCGATCGATCGCCATCGTAACTATCGAAGTGTCTTGTTAGGGCGTGTTTGGTAGGATGCGACCCGAGTATAGGAAAGTTGGTAGCTGCTACAAGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGTGCTTCATGATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTAGTGAAGGATATCCAAGATGCTTGCAAATTATTTGAACCAATCTATGATCAAACAGATGGTGGTGATGGCTATGTTTCTGTTGAAGTATCTCCCAGGCTCGCTGATGACACTGAGGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTGATCGCCCCAATGTGTATATTAAGATTCCTGCTACAGAGGCATGTGTGCCTTCAATTAAGGAAGTTATTGCTAATGGGATAAGTGTGAATGTGACGCTGATATTCTCTCTTGCAAGATATGAAGCTGTAATAGATGCTTACTTGGATGGTCTTGAGGCATCTGGGTTAAATGACCTCTCTAGAGTTACAAGTGTTGCCTCTTTCTTTGTCAGTAGAGTGGACACTCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAGGGGGCCAAGAAGCAAAGGCTCCTTTGGGCCTCAACCAGTGTAAAGAACCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTCTCCAGAAATTGGGTATTGACTGGAGCTTTGTTGGTTCCCAGCTTGAACTTGAAGGAGTGGACTCGTTTAAGAAGAGCTTTGACAGCCTCCTGGATTCTCTGCAAGAGAAGGCAAACTCTCTTAAGTTGGTCAGCCACTGAAGTTTGAACGTCATGGTTAGTAATGCAGTGCTGTGTATGATGGCATCTATGGATTAATAAAAGGCAGCGGCTGTGCATTTTGTGCTGCTGCAAATGTGCTTCATGGAGTCATTTATTTAGACGATAGTGATACAATGTAAATGGGAAAAATTGTCCGCTTCAAGTCAAGCGTTTTGTTTTTTCCCCACTATACAATGGTTGTGCGTTTATGTTTAAAAGTCTTACATTTTAGTTCGAATTTTTAATTAAAATTTTGTTGTGATCAATAACACAACTCATGCATGTTTAACTAATAATAAATTGAGGGCAGTTCACCAAGTCGCTTCCCTTAGGCCAGAGACAGCGAAAACCACACAAGGTCGTAAGGGAAATTGGGATTTGGGAAAGCTATCTCCTTTCAGCAATTGCTTCCTGCACCTCCAGACTTGGTTCTTGCACCCGGATCTAGAATGTAATTTACATTCCGGATTAGTCATTGCTGAATGTAAAATTTTACATTTTGGATTACATTCTGAATGAGGGTTTCTGGAAGTTTAAAAAGGTGTCTAC

>Glyma08g47790.3   sequence type=transcript   gene model=Glyma08g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAACGAAAAGGTGCACCAACTTTCCCTCTACCAAATCTCATAAAAACTAATAAGTTAATATCATGATATAAATCGAACCACCTACTTGGTGTCTTGCAATTCCCAATGGCCTCCATTTTCAAGCTCTCAACGCCATCTCCAGCTGCTTCCTTATCAGAAGCGCTTCGCCCCAGAGATTCTCGCTTCCTCTCCTTCAATCCTTCTTCCAACGCTATTAATTACAAAATTAACCTCTCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGTGCTTCATGATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTAGTGAAGGATATCCAAGATGCTTGCAAATTATTTGAACCAATCTATGATCAAACAGATGGTGGTGATGGCTATGTTTCTGTTGAAGTATCTCCCAGGCTCGCTGATGACACTGAGGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTGATCGCCCCAATGTGTATATTAAGATTCCTGCTACAGAGGCATGTGTGCCTTCAATTAAGGAAGTTATTGCTAATGGGATAAGTGTGAATGTGACGCTGATATTCTCTCTTGCAAGATATGAAGCTGTAATAGATGCTTACTTGGATGGTCTTGAGGCATCTGGGTTAAATGACCTCTCTAGAGTTACAAGTGTTGCCTCTTTCTTTGTCAGTAGAGTGGACACTCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGGTAACTGTTTATTGTTTTCCAAACTAATTTCTATTCTTGGCTTTGGATTTATTACACTTTCAAATGTCAAATATGCTCTTCGGATTGCATATTGAATTTTACAGGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAGGGGGCCAAGAAGCAAAGGCTCCTTTGGGCCTCAACCAGTGTAAAGAACCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTCTCCAGAAATTGGGTATTGACTGGAGCTTTGTTGGTTCCCAGCTTGAACTTGAAGGAGTGGACTCGTTTAAGAAGAGCTTTGACAGCCTCCTGGATTCTCTGCAAGAGAAGGCAAACTCTCTTAAGTTGGTCAGCCACTGAAGTTTGAACGTCATGGTTAGTAATGCAGTGCTGTGTATGATGGCATCTATGGATTAATAAAAGGCAGCGGCTGTGCATTTTGTGCTGCTGCAAATGTGCTTCATGGAGTCATTTATTTAGACGATAGTGATACAATGTAAATGGGAAAAATTGTCCGCTTCAAGTCAAGCGTTTTGTTTTTTCCCCACTATACAATGGTTGTGCGTTTATGTTTAAAAGTCTTACATTTTAGTTCGAATTTTTAATTAAAATTTTGTTGTGATCAATAACACAACTCATGCATGTTTAACTAATAATAAATTGAGGGCAGTTCACCAAGTCGCTTCCCTTAGGCCAGAGACAGCGAAAACCACACAAGGTCGTAAGGGAAATTGGGATTTGGGAAAGCTATCTCCTTTCAGCAATTGCTTCCTGCACCTCCAGACTTGGTTCTTGCACCCGGATCTAGAATGTAATTTACATTCCGGATTAGTCATTGCTGAATGTAAAATTTTACATTTTGGATTACATTCTGAATGAGGGTTTCTGGAAGTTTAAAAAGGTGTCTAC

>Glyma08g47790.1   sequence type=CDS   gene model=Glyma08g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCATTTTCAAGCTCTCAACGCCATCTCCAGCTGCTTCCTTATCAGAAGCGCTTCGCCCCAGAGATTCTCGCTTCCTCTCCTTCAATCCTTCTTCCAACGCTATTAATTACAAAATTAACCTCTCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGTGCTTCATGATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTAGTGAAGGATATCCAAGATGCTTGCAAATTATTTGAACCAATCTATGATCAAACAGATGGTGGTGATGGCTATGTTTCTGTTGAAGTATCTCCCAGGCTCGCTGATGACACTGAGGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTGATCGCCCCAATGTGTATATTAAGATTCCTGCTACAGAGGCATGTGTGCCTTCAATTAAGGAAGTTATTGCTAATGGGATAAGTGTGAATGTGACGCTGATATTCTCTCTTGCAAGATATGAAGCTGTAATAGATGCTTACTTGGATGGTCTTGAGGCATCTGGGTTAAATGACCTCTCTAGAGTTACAAGTGTTGCCTCTTTCTTTGTCAGTAGAGTGGACACTCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAGGGGGCCAAGAAGCAAAGGCTCCTTTGGGCCTCAACCAGTGTAAAGAACCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTCTCCAGAAATTGGGTATTGACTGGAGCTTTGTTGGTTCCCAGCTTGAACTTGAAGGAGTGGACTCGTTTAAGAAGAGCTTTGACAGCCTCCTGGATTCTCTGCAAGAGAAGGCAAACTCTCTTAAGTTGGTCAGCCACTGA

>Glyma08g47790.2   sequence type=CDS   gene model=Glyma08g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGACCCGAGTATAGGAAAGTTGGTAGCTGCTACAAGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGTGCTTCATGATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTAGTGAAGGATATCCAAGATGCTTGCAAATTATTTGAACCAATCTATGATCAAACAGATGGTGGTGATGGCTATGTTTCTGTTGAAGTATCTCCCAGGCTCGCTGATGACACTGAGGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTGATCGCCCCAATGTGTATATTAAGATTCCTGCTACAGAGGCATGTGTGCCTTCAATTAAGGAAGTTATTGCTAATGGGATAAGTGTGAATGTGACGCTGATATTCTCTCTTGCAAGATATGAAGCTGTAATAGATGCTTACTTGGATGGTCTTGAGGCATCTGGGTTAAATGACCTCTCTAGAGTTACAAGTGTTGCCTCTTTCTTTGTCAGTAGAGTGGACACTCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGGCAGCAGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATTTTCTGGTCCAAGGTGGGAAGCTCTAGTTAAAAAGGGGGCCAAGAAGCAAAGGCTCCTTTGGGCCTCAACCAGTGTAAAGAACCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTCTCCAGAAATTGGGTATTGACTGGAGCTTTGTTGGTTCCCAGCTTGAACTTGAAGGAGTGGACTCGTTTAAGAAGAGCTTTGACAGCCTCCTGGATTCTCTGCAAGAGAAGGCAAACTCTCTTAAGTTGGTCAGCCACTGA

>Glyma08g47790.3   sequence type=CDS   gene model=Glyma08g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCATTTTCAAGCTCTCAACGCCATCTCCAGCTGCTTCCTTATCAGAAGCGCTTCGCCCCAGAGATTCTCGCTTCCTCTCCTTCAATCCTTCTTCCAACGCTATTAATTACAAAATTAACCTCTCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGTGCTTCATGATCTTTATGAGAAAGAAGGGCAGAGTCCATGGTATGATAATCTCTGCAGACCTGTTACAGACCTTCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCGATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTAGTGAAGGATATCCAAGATGCTTGCAAATTATTTGAACCAATCTATGATCAAACAGATGGTGGTGATGGCTATGTTTCTGTTGAAGTATCTCCCAGGCTCGCTGATGACACTGAGGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTGATCGCCCCAATGTGTATATTAAGATTCCTGCTACAGAGGCATGTGTGCCTTCAATTAAGGAAGTTATTGCTAATGGGATAAGTGTGAATGTGACGCTGATATTCTCTCTTGCAAGATATGAAGCTGTAATAGATGCTTACTTGGATGGTCTTGAGGCATCTGGGTTAAATGACCTCTCTAGAGTTACAAGTGTTGCCTCTTTCTTTGTCAGTAGAGTGGACACTCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGAGGCTCTTAATCTACGTGGGAAGGTAACTGTTTATTGTTTTCCAAACTAA

>Glyma08g47790.1   sequence type=predicted peptide   gene model=Glyma08g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIFKLSTPSPAASLSEALRPRDSRFLSFNPSSNAINYKINLSASLRSIHSLPLKTSLRIKCSQTDGNGSPAKRTVLHDLYEKEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQAGKDIESAYWELVVKDIQDACKLFEPIYDQTDGGDGYVSVEVSPRLADDTEGTIEAAKWLHKVVDRPNVYIKIPATEACVPSIKEVIANGISVNVTLIFSLARYEAVIDAYLDGLEASGLNDLSRVTSVASFFVSRVDTLIDKALEKIGTPEALNLRGKAAVAQAALAYQLYQRKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYSDTLYVAPLIGPDTVSTMPDQALQAFIDHGTVSRTIDSNASEAEGIYNALQKLGIDWSFVGSQLELEGVDSFKKSFDSLLDSLQEKANSLKLVSH*

>Glyma08g47790.2   sequence type=predicted peptide   gene model=Glyma08g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPEYRKVGSCYKIKCSQTDGNGSPAKRTVLHDLYEKEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQAGKDIESAYWELVVKDIQDACKLFEPIYDQTDGGDGYVSVEVSPRLADDTEGTIEAAKWLHKVVDRPNVYIKIPATEACVPSIKEVIANGISVNVTLIFSLARYEAVIDAYLDGLEASGLNDLSRVTSVASFFVSRVDTLIDKALEKIGTPEALNLRGKAAVAQAALAYQLYQRKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYSDTLYVAPLIGPDTVSTMPDQALQAFIDHGTVSRTIDSNASEAEGIYNALQKLGIDWSFVGSQLELEGVDSFKKSFDSLLDSLQEKANSLKLVSH*

>Glyma08g47790.3   sequence type=predicted peptide   gene model=Glyma08g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIFKLSTPSPAASLSEALRPRDSRFLSFNPSSNAINYKINLSASLRSIHSLPLKTSLRIKCSQTDGNGSPAKRTVLHDLYEKEGQSPWYDNLCRPVTDLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQAGKDIESAYWELVVKDIQDACKLFEPIYDQTDGGDGYVSVEVSPRLADDTEGTIEAAKWLHKVVDRPNVYIKIPATEACVPSIKEVIANGISVNVTLIFSLARYEAVIDAYLDGLEASGLNDLSRVTSVASFFVSRVDTLIDKALEKIGTPEALNLRGKVTVYCFPN*







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