Glyma08g47740 - SoyBase

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Report for Sequence Feature Glyma08g47740

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46527122
stop:	46535179
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43160	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS family protein \| chr2:17948884-17953267 FORWARD LENGTH=895	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
KOG2056	KOG	Equilibrative nucleoside transporter protein	JGI		ISS
PTHR12276	Panther	EPSIN/ENT-RELATED	JGI		ISS
PTHR12276:SF44	Panther		JGI		ISS
PF01417	PFAM	ENTH domain	JGI		ISS
UniRef100_A2Q4X4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Epsin, N-terminal; ENTH/VHS n=1 Tax=Medicago truncatula RepID=A2Q4X4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KZI6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZI6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47740

Paralog	Evidence	Comments
Glyma18g53750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g362400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g47740

Limit To All Plant Sequences

>Glyma08g47740.1   sequence type=CDS   gene model=Glyma08g47740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGGTTATTGGTCAAACTGTTAGGGACCTTAAAAGAGAAGTAAATAAGAAAGTGCTGAAAGTTCCTGGGATTGAACAGAAGGTTCTTGATGCTACCAGCAATGAACCATGGGGTCCTCATGGATCACTTCTTGCAGATATTGCTCAGGCAACCAGAAACCCTCATGAATACCAGATGATCATGTCAGTAATCTGGAAGCGAATTAATGACACTGGCAAGAATTGGCGACATGTCTACAAGGCTTTGACAGTACTAGAGTACTTGGTGGCTCATGGGTCAGAGCGAGTCATAGATGAGATCAGAGAACATGCTTACCAAATATCAACATTGTCCGATTTTCAATATATTGATTCCAGTGGAAGAGATCAAGGAAACAATGTCAGGAAGAAATCTCAAAGTCTGGTTGTCCTTGTGAATGATAAAGAAAGAATCATAGAAGTTAGGCAGAAGGCTGCTGCTAACAGGGACAAGTTTCGCAACAGTACAGCAGGTGGAATGTATAGACCTGGTTCATATTCAAGCAGTGGAGCCTATGGTGACAGATATGATGATGATCGTTATGGAAGCAGGGAAGAAGATAGAAATGGCTATGGTTATGGAAAGGAAAGAGAATGGGGCAATAGAGATGATGATCGACATAGTCGTGATGGAGATCGTTATGGCAGAGATTATGAGGATCGTTATGGCAGGGATGGATACAGAGATGACGACTACAGGGGAAGAAGTCGAAGTGTTGATTACCAATATGACACAAGAAGCAGGAGCTCTGATAGAGATCGTTATGATGATGATGGACAACACTCATCTCGTGGAAGCAATGCTAAAGCTGAAGACCAATCTCTGGAAGCAAGGCTTGAGCGGAAACTTTCTGAGCAAAATATGGGTGCTCCTCCTAGCTATGAAGAAGCTGTCAGTGAATCTCGCAGCCCTGTACACAGTGAAAGAGATGTGGAAACTTCAGCAGCACCTGCTCCTAGAGACTCCTCTCCTCATGTAAATGATAATCCTAGTCAAACCTCTGCTCCTACGGGATCTTTTCCTGTAAACAATAATCCAACCGAAGCAACTACTGCTGCCAGTACTGCTGTATCTGGAGCTCAGGAAACTGAGGCGACTGATGATTTTTTTGACCCACGTGGTCCTGCATCAGCTGCCCCAGCCACCACTAGTAACGTTGAAATGGACTTGCTCGGCTCCCTCTCAGACTCGTCCTCTTCAAATGCATTATCTCTTGTACCAGCTGCATCAGCAACTGCAGCCCCTGATGCAAATGCTGGATCAACAGCTTCCTTTGCAGCACCACCATCTGGGTCCAATAATTTTGATCAGTCTTTTGAAGATCCATTTGGTGACTCGCCATTCAAGGCTTTTACTTCTACTGAAACTGCTCCATCTCAACCCCAGACATATCAGAGTATTGAGCCATCCCAATCAAATGGCCTTAATGCAGAAACAAACTCTAACTTTGGGTTTGGGGACTCATTTTCTGTTGTACCATACTCTGCACCTGTTTCCTCTGACGCTCAACCTTTCTCTACAAACTCTCAGTTTCCGTCTCAAGATATGTCATCTTCACAGCCAGAAACAGATATTCTTGCAGACATTCTTCCTCAAGCACCATTATCTGAGATGCATTCACAGCAGAACATTCCAGTTCCTACAGATCAATTTTCTCAACAACCCTTTTCTGCTCCTAATGGCCAACCAGGACAAGTACAATCATCCTTTTCATCTCCCTCCAGTCAATATGCACAACCACCCTTTTCATCTCATGCTGGTCAACCTAGCTTGCATGCATTTTCATCTCCTACTGGCCAACATTTGCAGTCGCCTTTTGCTTCTCAAGGTGGCCAACCTGCACAATCAGGTGGTATGTATGGTGGATTGCACTCCCAGGGTGGATATCCAACCATGTCTCCTCAATCCCAAAATGGATATAATGGGCATATGAATAGTGGGAACTTTGGATCGACAGCAGCTTTTCCATCACACATGGCTCCCCAAGCTCCAACAGGACAGCTGTCACAGGGCACCAACTTCCCCCATCATGGAGGATCTACTGCTCACACTGCTCCGCATTTGTCTTCTTATTCTCCAACTCATCAAGCATCACAGTTTAACAGCCAGAGCTTTATTGGACAACAAGGGAATGCAGCCCCCTATAGCTCACCAATTACCAATCAATCATTTGCTTCTAATGCTTCACAATCCAATTCTTTAGTTTCTCAACCATCCAAGGACAAGTTTGAGACTAAATCAACAGTTTGGGCAGATACACTAAGCAGGGGATTGGTTAATTTGAATATATCTGGACCTAAAACAAATCCATTAGCAGATATTGGGGTTGACTTTGAAGCCATTAATAGGAAGGAAAAGAGAATGGAGAAGCCCACTACCACAGCTGTAACATCAACTGTAACTATGGGTAAAGCTATGGGATCGGGTTCAGGTATGGGTCGGTCTGGTGCTGGTTCTCTAAGGCCTCCTCAAAACCCAATGATGGGTTCTGGCATGGGCAATGGTCCTGGTGTTGGTATGGGTATGGGAGGCTATGGAGGAGGCATGAATGCATCAATGGGTATGGGAATGGGGGGGATGGGGGGAATGGGTATGGGACAAGGATACCAGATGCAACCCCCAACTGGATTGCCTCCCGGCTCCAACATGCCAGGTAATTATAATAACTCCATGATGGGTTCAGGTAGTTATGGTCAGCAGCCATATGGTAGTTATGGTCAGCAACCATATGGCGGCTACCGATGA

Predicted protein sequences of Glyma08g47740

Limit To All Plant Sequences

>Glyma08g47740.1   sequence type=predicted peptide   gene model=Glyma08g47740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKVIGQTVRDLKREVNKKVLKVPGIEQKVLDATSNEPWGPHGSLLADIAQATRNPHEYQMIMSVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDEIREHAYQISTLSDFQYIDSSGRDQGNNVRKKSQSLVVLVNDKERIIEVRQKAAANRDKFRNSTAGGMYRPGSYSSSGAYGDRYDDDRYGSREEDRNGYGYGKEREWGNRDDDRHSRDGDRYGRDYEDRYGRDGYRDDDYRGRSRSVDYQYDTRSRSSDRDRYDDDGQHSSRGSNAKAEDQSLEARLERKLSEQNMGAPPSYEEAVSESRSPVHSERDVETSAAPAPRDSSPHVNDNPSQTSAPTGSFPVNNNPTEATTAASTAVSGAQETEATDDFFDPRGPASAAPATTSNVEMDLLGSLSDSSSSNALSLVPAASATAAPDANAGSTASFAAPPSGSNNFDQSFEDPFGDSPFKAFTSTETAPSQPQTYQSIEPSQSNGLNAETNSNFGFGDSFSVVPYSAPVSSDAQPFSTNSQFPSQDMSSSQPETDILADILPQAPLSEMHSQQNIPVPTDQFSQQPFSAPNGQPGQVQSSFSSPSSQYAQPPFSSHAGQPSLHAFSSPTGQHLQSPFASQGGQPAQSGGMYGGLHSQGGYPTMSPQSQNGYNGHMNSGNFGSTAAFPSHMAPQAPTGQLSQGTNFPHHGGSTAHTAPHLSSYSPTHQASQFNSQSFIGQQGNAAPYSSPITNQSFASNASQSNSLVSQPSKDKFETKSTVWADTLSRGLVNLNISGPKTNPLADIGVDFEAINRKEKRMEKPTTTAVTSTVTMGKAMGSGSGMGRSGAGSLRPPQNPMMGSGMGNGPGVGMGMGGYGGGMNASMGMGMGGMGGMGMGQGYQMQPPTGLPPGSNMPGNYNNSMMGSGSYGQQPYGSYGQQPYGGYR*

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