Glyma08g47720 - SoyBase

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Report for Sequence Feature Glyma08g47720

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46513877
stop:	46519381
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59340	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic protein of unknown function (DUF914) \| chr3:21928971-21931030 REVERSE LENGTH=333	SoyBase	E_val: 7.00E-156	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2766	KOG	Predicted membrane protein	JGI		ISS
PTHR14233	Panther	DUF914-RELATED	JGI		ISS
PTHR14233:SF3	Panther	DUF914/ANTHOCYANIN MEMBRANE PROTEIN-RELATED	JGI		ISS
PF06027	PFAM	Eukaryotic protein of unknown function (DUF914)	JGI		ISS
UniRef100_G7KWQ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Solute carrier family 35 member F1 n=1 Tax=Medicago truncatula RepID=G7KWQ4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KZI2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZI2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47720

Paralog	Evidence	Comments
Glyma18g53770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g362100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g47720

Limit To All Plant Sequences

>Glyma08g47720.2   sequence type=transcript   gene model=Glyma08g47720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAAGATTAAGTTTCTTATACGAATAAATTTTTTATTTGTCATTGAATTTAATATAATTTACATTTTTAAAAAAATTAGATTAAGACAAGTTGTATATATAAAGGTCAATGGTGCAATCGCGGGAGAGGAAGTGAAAGAGAGATTGATTTGACTATGAGCATGCAGATTTGGACCCGAAACACGTTAATAGGTCTCGGCTTGGGTCAGTTTCTTTCTCTTCTCATCACTTCCACCGGCTTCACTTCCTCTGAATTGGCTAAAAAAGGAATTAATGCTCCAACTTCACAGTCGTTTCTGAATTATGTGTTCTTGACGCTTGTCTATGGAACTGTTCTCCTATATCGAAGGAAAGCACTCAAGGCAAAATGGTACTATTATATAATTCTCGGATTGGTTGATGTAGAAGCAAATTTTCTTGTTGTGAAGGCATACCAATACACCTCACTCACCAGTGTGATGCTGCTTGACTGCTGGTCAATTCCGTCCGTCATGCTTCTTACATGGCTTTTCTTGAAAACAAAATATAGATTCAAAAAGATTACTGGTGTAGTTGTTTGCGTTGCTGGCCTTGTCTTGGTTGTGTTTTCTGATGTTCATTCAGGTGACCGTGCAGGTGGAAGCAATCCTCGTAAAGGGGACCTTCTTGTTATTGCCGGTGCTACCTTGTATGCAATCAGTAATGTCAGTGAGGAGTTTCTTGTGAAAAGTGCTGATAGAGTTGAGCTTATGGCAATGTTAGGTCTCTCTGGTGGCATTATCAGTGCCATTCAAATAAGCATACTTGAGCGCAATGAACTTAAATCTATTCATTGGTCGGCTGAGGCAGCGCTTCCTTTTGTTGGATTTGCAGTGGCCATGTTTATGTTTTACTCTTTAGTCCCTGTTCTGCTTAAGATCAATGGTTCTACAATGCTAAATTTGTCTCTGTTGACCTCAGACATGTGGGCTGTCTTAATTCGTATTTTTGCGTACCATGAGAAGGTTGATTGGATGTACTTTGTGTCATTTGGTGCCGTTACCATTGGGCTCATAATCTATTCAGGAGGGGACAGAGATGATGATCAACACCCTCCAAACGCTGCTATCGATGATCATCGCCCTGCAGTCAAACAAGATGAAGAAGCCAATTCAGGAAATCATAGCAAAGGAGCTGCGGCTGGAAGCTCAAAAACATGGGTAGCTTAGTATAGACCTACAGATTCATACACAGAAAAACCATGAGGAAAAGTATCCTCAAGAGAATGGAGATTAGTCTAAATTTATTATGTATTGGCAGCTCCTGCAAGATTGCATTCCAAGAAGATAATGTTCCTTCAGATGCTGCTCTTGTTCACATGTCTTGTAATTTAAAGGATCCTCTAAAGTTTCGTTTGATGGAATTTTGAGAAAACTCTTCATCATCTGGAGATCAATAGCCAACTTTTTAGTCAGTATGTTGTTAATTATCTGATATTTTAAAGTAAGAAATTAATTTAAAGAAATAGAAACTTTTGGAGTC

Coding sequences of Glyma08g47720

Limit To All Plant Sequences

>Glyma08g47720.1   sequence type=CDS   gene model=Glyma08g47720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTTCGACTTTGCCAGGATTTGGACCCGAAACACGTTAATAGGTCTCGGCTTGGGTCAGTTTCTTTCTCTTCTCATCACTTCCACCGGCTTCACTTCCTCTGAATTGGCTAAAAAAGGAATTAATGCTCCAACTTCACAGTCGTTTCTGAATTATGTGTTCTTGACGCTTGTCTATGGAACTGTTCTCCTATATCGAAGGAAAGCACTCAAGGCAAAATGGTACTATTATATAATTCTCGGATTGGTTGATGTAGAAGCAAATTTTCTTGTTGTGAAGGCATACCAATACACCTCACTCACCAGTGTGATGCTGCTTGACTGCTGGTCAATTCCGTCCGTCATGCTTCTTACATGGCTTTTCTTGAAAACAAAATATAGATTCAAAAAGATTACTGGTGTAGTTGTTTGCGTTGCTGGCCTTGTCTTGGTTGTGTTTTCTGATGTTCATTCAGGTGACCGTGCAGGTGGAAGCAATCCTCGTAAAGGGGACCTTCTTGTTATTGCCGGTGCTACCTTGTATGCAATCAGTAATGTCAGTGAGGAGTTTCTTGTGAAAAGTGCTGATAGAGTTGAGCTTATGGCAATGTTAGGTCTCTCTGGTGGCATTATCAGTGCCATTCAAATAAGCATACTTGAGCGCAATGAACTTAAATCTATTCATTGGTCGGCTGAGGCAGCGCTTCCTTTTGTTGGATTTGCAGTGGCCATGTTTATGTTTTACTCTTTAGTCCCTGTTCTGCTTAAGATCAATGGTTCTACAATGCTAAATTTGTCTCTGTTGACCTCAGACATGTGGGCTGTCTTAATTCGTATTTTTGCGTACCATGAGAAGGTTGATTGGATGTACTTTGTGTCATTTGGTGCCGTTACCATTGGGCTCATAATCTATTCAGGAGGGGACAGAGATGATGATCAACACCCTCCAAACGCTGCTATCGATGATCATCGCCCTGCAGTCAAACAAGATGAAGAAGCCAATTCAGGAAATCATAGCAAAGGAGCTGCGGCTGGAAGCTCAAAAACATGGGTAGCTTAG

>Glyma08g47720.2   sequence type=CDS   gene model=Glyma08g47720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGCAGATTTGGACCCGAAACACGTTAATAGGTCTCGGCTTGGGTCAGTTTCTTTCTCTTCTCATCACTTCCACCGGCTTCACTTCCTCTGAATTGGCTAAAAAAGGAATTAATGCTCCAACTTCACAGTCGTTTCTGAATTATGTGTTCTTGACGCTTGTCTATGGAACTGTTCTCCTATATCGAAGGAAAGCACTCAAGGCAAAATGGTACTATTATATAATTCTCGGATTGGTTGATGTAGAAGCAAATTTTCTTGTTGTGAAGGCATACCAATACACCTCACTCACCAGTGTGATGCTGCTTGACTGCTGGTCAATTCCGTCCGTCATGCTTCTTACATGGCTTTTCTTGAAAACAAAATATAGATTCAAAAAGATTACTGGTGTAGTTGTTTGCGTTGCTGGCCTTGTCTTGGTTGTGTTTTCTGATGTTCATTCAGGTGACCGTGCAGGTGGAAGCAATCCTCGTAAAGGGGACCTTCTTGTTATTGCCGGTGCTACCTTGTATGCAATCAGTAATGTCAGTGAGGAGTTTCTTGTGAAAAGTGCTGATAGAGTTGAGCTTATGGCAATGTTAGGTCTCTCTGGTGGCATTATCAGTGCCATTCAAATAAGCATACTTGAGCGCAATGAACTTAAATCTATTCATTGGTCGGCTGAGGCAGCGCTTCCTTTTGTTGGATTTGCAGTGGCCATGTTTATGTTTTACTCTTTAGTCCCTGTTCTGCTTAAGATCAATGGTTCTACAATGCTAAATTTGTCTCTGTTGACCTCAGACATGTGGGCTGTCTTAATTCGTATTTTTGCGTACCATGAGAAGGTTGATTGGATGTACTTTGTGTCATTTGGTGCCGTTACCATTGGGCTCATAATCTATTCAGGAGGGGACAGAGATGATGATCAACACCCTCCAAACGCTGCTATCGATGATCATCGCCCTGCAGTCAAACAAGATGAAGAAGCCAATTCAGGAAATCATAGCAAAGGAGCTGCGGCTGGAAGCTCAAAAACATGGGTAGCTTAG

Predicted protein sequences of Glyma08g47720

Limit To All Plant Sequences

>Glyma08g47720.1   sequence type=predicted peptide   gene model=Glyma08g47720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMFDFARIWTRNTLIGLGLGQFLSLLITSTGFTSSELAKKGINAPTSQSFLNYVFLTLVYGTVLLYRRKALKAKWYYYIILGLVDVEANFLVVKAYQYTSLTSVMLLDCWSIPSVMLLTWLFLKTKYRFKKITGVVVCVAGLVLVVFSDVHSGDRAGGSNPRKGDLLVIAGATLYAISNVSEEFLVKSADRVELMAMLGLSGGIISAIQISILERNELKSIHWSAEAALPFVGFAVAMFMFYSLVPVLLKINGSTMLNLSLLTSDMWAVLIRIFAYHEKVDWMYFVSFGAVTIGLIIYSGGDRDDDQHPPNAAIDDHRPAVKQDEEANSGNHSKGAAAGSSKTWVA*

>Glyma08g47720.2   sequence type=predicted peptide   gene model=Glyma08g47720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMQIWTRNTLIGLGLGQFLSLLITSTGFTSSELAKKGINAPTSQSFLNYVFLTLVYGTVLLYRRKALKAKWYYYIILGLVDVEANFLVVKAYQYTSLTSVMLLDCWSIPSVMLLTWLFLKTKYRFKKITGVVVCVAGLVLVVFSDVHSGDRAGGSNPRKGDLLVIAGATLYAISNVSEEFLVKSADRVELMAMLGLSGGIISAIQISILERNELKSIHWSAEAALPFVGFAVAMFMFYSLVPVLLKINGSTMLNLSLLTSDMWAVLIRIFAYHEKVDWMYFVSFGAVTIGLIIYSGGDRDDDQHPPNAAIDDHRPAVKQDEEANSGNHSKGAAAGSSKTWVA*

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