SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G59760 | AT | Annotation by Michelle Graham. TAIR10: RNA helicase, ATP-dependent, SK12/DOB1 protein | chr1:21984571-21990110 REVERSE LENGTH=988 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0000741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: karyogamy | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity | SoyBase | N/A | ISS |
| GO:0010212 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0031125 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA 3'-end processing | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon development | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| GO:0016817 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides | SoyBase | N/A | ISS |
| GO:0016818 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | SoyBase | N/A | ISS |
| KOG0948 | KOG | Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily | JGI | ISS | |
| PTHR11752 | Panther | HELICASE SKI2W | JGI | ISS | |
| PTHR11752:SF2 | Panther | HELICASE SKI2-RELATED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF08148 | PFAM | DSHCT (NUC185) domain | JGI | ISS | |
| UniRef100_G7KSG0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Helicase, putative n=1 Tax=Medicago truncatula RepID=G7KSG0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337E1C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337E1C related cluster n=1 Tax=unknown RepID=UPI0002337E1C | SoyBase | E_val: 0 | ISS |
|
Glyma08g47700 not represented in the dataset |
Glyma08g47700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g361900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g47700.1 sequence type=CDS gene model=Glyma08g47700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTCACTAAAGAGAAAGTCCCCAGAGGAGCCTTCAAGTTCAACTTTGCAACCACTCCATGATTGTGTGCACCATGTCTCATATCCAGATGGTTACAACAACGTCCACGCTTCTTCTTCTTCTCCAACTCACACTACTACTTCAGAACCCGCCAAGAACTTCCCCTTCCCTCTCGACCCTTTTCAGTCCAAATCCATTTCTTGCCTCGAAAACGGCGAGTCCGTCATGGTCTCTGCACACACCTCTGCTGGGAAAACCGTGGTGGCATTGTATGCTATTGCCATGTCCCTCCGTAATGGCCAGCGCGTGGTCTACACTTCCCCTATCAAGGCTCTCAGCAACCAGAAGTACAGAGAATTCAAGGAAGAATTCTCCGACGTTGGTTTGATGACCGGAGACGTCACAATTGATCCCAATGCTTCTTGCTTGGTCATGACTACCGAAATCTGGCGTAGCATGCAATACAAAGGCTCTGAGCTCACTAGGGAGGTAGCTTGGATTGTTTTTGATGAGGTCCATTACATGCGTGATCGTGAGAGGGGTGTGGTTTGGGAAGAGAGCATTGTTTTGTCCCCCAAGAATTCACGTTTCGTCTTCCTCTCTGCCACTGTCCCCAATGCCAAAGAGTTTGCTGATTGGGTGGCGAAGGTGCACCAACAGCCTTGTCATGTCGTTTATACAGATTACCGACCAACTCCCCTCCAGCATTATCTTTTCCCTTCTGGAGGTGATGGTCTGTATTTGGTTGTCGACGAAAAGGGAAAGTTTCGTGAAGACAGTTTTCAGAAATCTTTGAATGCTCTCATTCCTGCCACTGAGGGTGACAAGAAGAAAGAAAATGGCAAGTGGCAAAAAGGTTTGGTGCTTGGTAGAAGTGGTGAAGAAAGTGACATATTCAAGATGGTGAAAATGATCATTCAGCGTCAATATGACCCTGTCATACTCTTCAGCTTTAGCAAAAGGGAGTGTGAGTTTCTTGCAATGCAGATGGCAAAAATGGATCTTAATGGGGATAATGAGAAGGATAATATTGAACAAATATTTTGTAGTGCTATGGACATGCTTTCAGATGATGATAAGAAACTTCCCCAGGTTTCAAACATGCTGCCCTTGCTGAAACGTGGAATAGGAGTACATCACTCTGGTTTACTCCCAATTCTAAAGGAAGTGATTGAGATCTTATTTCAAGAGGGACTAATCAAGTGTTTGTTTGCCACCGAGACATTTAGCATTGGTTTGAACATGCCTGCAAAAACTGTTGTTTTCACAAATGTCCGGAAGTTTGACGGGGACAAGTTTAGGTGGATATCCAGTGGAGAATATATTCAAATGAGTGGTCGTGCTGGTCGACGAGGCATTGATGAACGTGGAATATGTATCCTCATGGTTGATGAGAAGATGGAGCCTTCTACTGCTAAAAATATGGTTAAAGGGGCAGCTGATAGTCTAAACAGTGCCTTTCATTTAAGCTACAACATGATTTTGAACCAAATGCGGTGTGAAGATGGTGATCCTGAAAATTTGCTACGTAATTCCTTTTTTCAGTTCCAAGCAGATCGTGCCATTCCTGATCTTGAGAAACAAATAAAGAGTCTTGAAGAAGAGAGGGAATCAATTGTTATTGAAGAAGAAAGCAGTCTGAAGGATTATTTCAATCTGCTTGAGCAGCATAGAGCTTTGAATAAGGAGATTCGTGACATTGTGCTGTCTCCAAGGCATTGTTTACCTTTTTTACAGCCTGGTAGGCTTGTCTCTCTCGAATGCACATCAAGTGATGAAGATCTACCCCTCATTTTTATTGAGGATCAGTTGACTTGGGGGTTGGTCATTAATTTTGAAAGGGTCAAGAGTGTATCTGAAGATGATGCAAGCATAAAACCTGAAGATGCATCTTACATTGTTGATGTTCTTACGAGATGTGTTGTGAGGAAAGATAAAATTGGAAAAAAATCTATCAAGATTGTTCCTCTGAAAGAAGTTGGAGAACCTCTAGTGGTTTCGGTTCCTATCTCTCAGATCAATACAATAAGTAGTTTGCGTCTATATATACCGAAGGATCTTTTGCCATTGGAAGCTCGAGAAAACACACTGAAAAAAGTGTTGGAAACTCTTACTAGATTTGGTGAGAAAGGATTGCCACTTCTAGATCCTGAAGAAGACATGAAGATTCAAAGCAGTTCATATAAAAAAGCATCTCGTAGAATAGAGGCTTTGGAGAGCCTATTTGAAAAGCATGAAATTGCAAAGTCACCACTTATAAAACAGAAATTGAAAGTTTTTCAGAGGAAGCAAGAACTGACTGCAAAGATAAAGTCCATTAAGAAAGCATTAAGATCTTCTTCTGCTTTAGCCTTCAAGGATGAACTTAAGGCAAGAAAGAGAGTTCTTCGTAGGCTCGGATACGCTACAAGTGACAATGTAGTGGAATTAAAAGGGAGGGTTGCTTGTGAAATTAGTAGTGCAGATGAACTGACCCTAACAGAGCTCATGTTCAATGGTGTTTTAAAGGACATAAAGGTGGAGGAAATGGTTTCTCTCCTTTCTTGTTTTGTCTGGCAAGAAAAAATTCATGATGCTGCCAAACCTCGGGAAGAACTTGATTTTCTTTTTATGCAATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAGGTGGAAATTGACGTTGAGAGTTTTGTTAAGTCGTTTAGGCCTGACATTATGGAGGCTGTGTATGCTTGGGCGAAAGGTTCAAAGTTCTATGAGATCATGGAAATCACTCAAGTCTTTGAAGGTAGCTTGATTAGAGCAATTAGACGACTTGAGGAAGTTCTTCAGCAGTTAATAGAAGCAGCTAAGTCAATTGGGGAAACTCAACTTGAGGCAAAGTTTGAAGAAGCTGTGTCCAAGATCAAGAGGGACATTGTCTTTGCTGCATCCCTGTATTTGTAG
>Glyma08g47700.1 sequence type=predicted peptide gene model=Glyma08g47700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSLKRKSPEEPSSSTLQPLHDCVHHVSYPDGYNNVHASSSSPTHTTTSEPAKNFPFPLDPFQSKSISCLENGESVMVSAHTSAGKTVVALYAIAMSLRNGQRVVYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSELTREVAWIVFDEVHYMRDRERGVVWEESIVLSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHVVYTDYRPTPLQHYLFPSGGDGLYLVVDEKGKFREDSFQKSLNALIPATEGDKKKENGKWQKGLVLGRSGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDNEKDNIEQIFCSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKMEPSTAKNMVKGAADSLNSAFHLSYNMILNQMRCEDGDPENLLRNSFFQFQADRAIPDLEKQIKSLEEERESIVIEEESSLKDYFNLLEQHRALNKEIRDIVLSPRHCLPFLQPGRLVSLECTSSDEDLPLIFIEDQLTWGLVINFERVKSVSEDDASIKPEDASYIVDVLTRCVVRKDKIGKKSIKIVPLKEVGEPLVVSVPISQINTISSLRLYIPKDLLPLEARENTLKKVLETLTRFGEKGLPLLDPEEDMKIQSSSYKKASRRIEALESLFEKHEIAKSPLIKQKLKVFQRKQELTAKIKSIKKALRSSSALAFKDELKARKRVLRRLGYATSDNVVELKGRVACEISSADELTLTELMFNGVLKDIKVEEMVSLLSCFVWQEKIHDAAKPREELDFLFMQLQDTARRVAQLQLECKVEIDVESFVKSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGETQLEAKFEEAVSKIKRDIVFAASLYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
