Glyma08g47620 - SoyBase

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Report for Sequence Feature Glyma08g47620

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46421669
stop:	46423664
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43120	AT	Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein \| chr2:17927339-17928871 FORWARD LENGTH=321	SoyBase	E_val: 3.00E-152	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR13903	Panther	PIRIN-RELATED	JGI		ISS
PF02678	PFAM	Pirin	JGI		ISS
PF05726	PFAM	Pirin C-terminal cupin domain	JGI		ISS
UniRef100_B9SN16	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pirin, putative n=1 Tax=Ricinus communis RepID=B9SN16_RICCO	SoyBase	E_val: 2.00E-168	ISS
UniRef100_I1KZH0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZH0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47620

Paralog	Evidence	Comments
Glyma18g53860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g361100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g47620

Limit To All Plant Sequences

>Glyma08g47620.1   sequence type=CDS   gene model=Glyma08g47620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCACATACACAACACACCTACCTAATACCTTGTTTATGAGAGCTATAAGTCACCACCTTTCACTGCTCAATTGGAGAATCTCTACCTCACGATCTCTTTTTTCTCTGAGAAATACTTGTACCAATACCATGTCTCAATCTGATAATTCCTCTCCTTTTACCACACCCAGATTGGTTCTCAAGAAGGTTTTGGCCAAATCTCAACATGAAGGGGATGGAGCTGTTGTCAGAAGAGGCATTGGAAGGAGCGAGTTGAAGAACTTGGATCCCTTCCTAATGTTGGATCACTTCTCAGTATCTCCCCCAGCAGGATTTCCCGATCATCCACACCGAGGTTTTGAAACCGTCACCTACATGCTAGAGGGAGGCATCACTCACCAAGATTTTGCTGGGCACAAGGGTACAATAAGAGCTGGTGATGTTCAGTGGATGACCGCAGGAAGGGGAATAATTCACTCTGAAATGCCAGCAGAAGCAAACAACAACAAGGGATTGCAACTGTGGATCAATTTATCATCCAGGGACAAAATGATCGAGCCTAATTACCAAGAACTTCCAAGTGAGAACATAGCAACAGCAGAAAAAGATGGGGTTGAAGTGAGAGTGATAGCAGGGGAAGCAATGGGAGTGCATTCGCCTGTGTACACACGAACACCAACCATGTACCTTGTTTTCTCCATGATGCCCAAAACTCAGTGGAATCAGAGCATTCCAGAGTCGTGGAATGCCTTTGTTTATATAATTGAAGGTGAAGGAGTTTTCGGGTCTCCAACATCATCCCCAACTGTGCCACACCATGTCCTTGTTTTGACTCAAGGTGATGGCCTCAGCGTATGGAATAACTCTTCAAAGCCTTTGAGATTTGTTCTGATTGGAGGCCAACCACTTAATGAGCCAGTTGTTCAGCATGGCCCTTTTGTGATGAACACGCAGTCTGAGATTGAGAACACAATTGAAGACTATCACTATGGCAGGAATGGCTTTGAGATGAGCAAGTATTGGATGTCTCAATAG

Predicted protein sequences of Glyma08g47620

Limit To All Plant Sequences

>Glyma08g47620.1   sequence type=predicted peptide   gene model=Glyma08g47620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTYTTHLPNTLFMRAISHHLSLLNWRISTSRSLFSLRNTCTNTMSQSDNSSPFTTPRLVLKKVLAKSQHEGDGAVVRRGIGRSELKNLDPFLMLDHFSVSPPAGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRAGDVQWMTAGRGIIHSEMPAEANNNKGLQLWINLSSRDKMIEPNYQELPSENIATAEKDGVEVRVIAGEAMGVHSPVYTRTPTMYLVFSMMPKTQWNQSIPESWNAFVYIIEGEGVFGSPTSSPTVPHHVLVLTQGDGLSVWNNSSKPLRFVLIGGQPLNEPVVQHGPFVMNTQSEIENTIEDYHYGRNGFEMSKYWMSQ*

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