Glyma08g47570 - SoyBase

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Report for Sequence Feature Glyma08g47570

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46391272
stop:	46395629
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13160	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:4176854-4179682 FORWARD LENGTH=456	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009816	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF657	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_C6ZRV0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Serine/threonine-protein kinase n=1 Tax=Glycine max RepID=C6ZRV0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6ZRV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase n=1 Tax=Glycine max RepID=C6ZRV0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g47570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g360600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g47570

Limit To All Plant Sequences

>Glyma08g47570.1   sequence type=CDS   gene model=Glyma08g47570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCTTTTCATGTTTCGATTCGAGTTCCAAGGAGGATCACAATCTCCGTCCTCAGCACCAACCCAATCAACCTCTCCCTTCTCAGATTTCCAGATTGCCCTCTGGAGCAGACAAGTTACGGTCCAGAAGTAATGGAGGTTCCAAAAGAGAACTGCAACAGCCTCCTCCCACCGTCCAAATTGCTGCTCAAACATTTACTTTCCGTGAACTTGCCGCTGCAACTAAAAACTTTAGACCAGAGTCCTTTGTTGGGGAAGGTGGTTTTGGAAGGGTCTACAAAGGCAGGCTTGAAACCACTGCTCAGATTGTTGCTGTCAAACAGTTAGACAAAAATGGTCTTCAGGGTAATCGGGAATTCCTTGTAGAGGTTCTCATGCTCAGTCTTCTACATCACCCTAACCTTGTCAATCTCATTGGATACTGTGCGGATGGGGATCAACGCCTCCTCGTTTATGAATTTATGCCTTTGGGATCATTGGAAGATCACCTTCATGATCTTCCCCCTGATAAGGAACCACTAGATTGGAACACTAGAATGAAAATTGCTGTTGGTGCTGCAAAAGGATTAGAATACCTTCACGATAAGGCAAATCCTCCTGTCATCTACAGAGACTTCAAGTCATCTAACATATTACTTGATGAAGGATACCACCCAAAACTTTCTGACTTTGGTCTTGCGAAGCTTGGTCCTGTTGGTGACAAATCACATGTTTCTACCCGTGTCATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAGCTGACTGTGAAGTCTGATGTATATAGTTTTGGGGTGGTCTTCTTAGAGCTGATTACTGGCCGTAAAGCAATTGACAGCACCCAGCCGCAGGGAGAACAGAACCTTGTCACATGGGCACGTCCACTTTTTAATGACCGCAGGAAGTTTTCAAAGTTGGCTGATCCCAGGCTGCAGGGGCGATTTCCCATGCGGGGTCTTTACCAGGCTCTTGCTGTGGCATCAATGTGCATTCAAGAATCAGCTGCAACGCGTCCTCTAATTGGAGATGTGGTGACAGCCCTCTCTTATCTGGCCAACCAGGCATATGACCCCAATGGTTATAGGGGGTCTAGTGATGATAAAAGGAACAGAGATGATAAAGGTGGAAGAATATCCAAAAATGATGAAGCTGGGGGATCTGGACGCAGATGGGACTTGGAAGGATCCGAGAAAGATGACTCCCCACGAGAAACTGCAAGGATTTTAAACAGAGATCTAGATAGAGAACGAGCTGTGGCTGAAGCCAAGATGTGGGGAGAGAACTTGAGACAAAAAAGAAAACAAAGTTTGCAGCAGGGCAGTCTTGATGCTTAA

Predicted protein sequences of Glyma08g47570

Limit To All Plant Sequences

>Glyma08g47570.1   sequence type=predicted peptide   gene model=Glyma08g47570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCFSCFDSSSKEDHNLRPQHQPNQPLPSQISRLPSGADKLRSRSNGGSKRELQQPPPTVQIAAQTFTFRELAAATKNFRPESFVGEGGFGRVYKGRLETTAQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAVGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPQGEQNLVTWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQAYDPNGYRGSSDDKRNRDDKGGRISKNDEAGGSGRRWDLEGSEKDDSPRETARILNRDLDRERAVAEAKMWGENLRQKRKQSLQQGSLDA*

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