Glyma08g47520 - SoyBase

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Report for Sequence Feature Glyma08g47520

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46358964
stop:	46360810
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13180	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 83 \| chr5:4196643-4197577 FORWARD LENGTH=252	SoyBase	E_val: 1.00E-93	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B2ZGQ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Glycine max RepID=B2ZGQ8_SOYBN	SoyBase	E_val: 4.00E-166	ISS
UniRef100_I1KZG0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZG0_SOYBN	SoyBase	E_val: 1.00E-166	ISS

Expression Patterns of Glyma08g47520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47520

Paralog	Evidence	Comments
Glyma18g53954	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g360200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g47520

Limit To All Plant Sequences

>Glyma08g47520.2   sequence type=transcript   gene model=Glyma08g47520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAGGGTGCGTTGCGTTGCAAAATCTGATAGTATTCATCTCATTTCATTTGTTCCCCGTTAAGGGAGAGACAGGGTTACTTGTGTACTTTCACTCACTCACTCACTCACTCACTCTCCAGCTGTATCCAATCACATAAGCTGACTTCATGCACTTCTCTCGCCTCATTTTTATTTTAACTAACAAAAATCCTTACTTTTTTTACATTTCATAAAACATACTCTACTTTTCTTTCTTTTTGTTTTGTTCAAGGAAGGAACACTGTGACAGTAGAAGCAAGCAAGAATTGGAATTGGAATTGGAATTGGAATGAATTCTCCTCCTCCTCCAAGACCAAGAGTGGAGAGGTCGAGCGGAACTAGGCTAGCAGCAGTTTCCACACAAGCCAAAACCAAAACCAAAACCAAAACCAAAATAAAAACTGTAGTTGTCAAAGTAAAAGAAAGGTTGAGTCTAGTTTACGCCAAATGTGTCTTCTTATTCTTCTCCTTCTTGTCAGACCCATTACTATAAAAGAAGCCACACTGCATCCTTCTCCATACCCTTTTACTTTCTTTATCCAATAATAATAACTCCATTTTCCCTCTGTCTTCCCCCCCTCCTCTACACAAAAATATATTATTAGCATGGAGAAGGTGAATTTTGTGAAGAATGGAGAGCTTAGATTGCCTCCGGGGTTCCGTTTCCACCCGACTGATGAGGAGCTGGTTCTGCAATACTTGAAGCGCAAGGTCTTCTCCTGCCCTTTGCCAGCCTCTATCATTCCTGAGCTTCATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTTCCTTTCTATTTTCCATTCACACCCATCATCCCCTTTCTCTTTCTCTAATTTCAATTCCATGCCCCCATTTTTAGGTGATTTGGAGCAAGAGAGATACTTCTTTAGCACCAAAGTGGCCAAATATCCCAACGGAAATCGCTCCAACAGAGCCACAAATTCGGGTTATTGGAAGGCAACTGGCTTGGACAAACAAATTGTTACTTCAAAAGGCAACAACCAAGTTGTCGGAATGAAGAAGACACTTGTTTTCTACAGAGGCAAGCCTCCTAATGGATCCAGAACTGATTGGATCATGCACGAGTATCGCCTCATCCTTAACGCCTCTCAGTCTCAGAGCCATGTTGTTCCCATGGAAAATTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGAATTGGTGCTAAAAATGGGGAGGAGAGCAACTCTAAGGTGGTTTTCTATGACTTCCTAGCGCAGAACAAGACCGATTCCTCCTCATCGGTCGCCAGTGGAATTACACATGAATCAGATGAACATGAAGAGAGCAGTAGCTCCAACACCTTCCCTTATACTATTAGAAGAAAACCTTAACAACCTTCCTTAAAAATTTAAGTTCATTATCTAGTTGTTGTTTTTAATTGTCTTTCCCTTTCCCTGTAATTATCATCAATCACTTGTTGAAAGGAAGCATCCTCTTCCCAAATGAGACCGGCATTAAGGGTAGTCTGGAGAGTATGGTACTAATACTAGTAGTAGTGTGTAATACACTTCTCATTTCCCTTCAATTTAACCCCTTTTTTTCTAAGGCCCGTGCTTCTTCTTTTAGCTAAAAGCTACTCATTTTCAGTTTCAAAGGAGATGCTTTCACAGAGGAAAAGTAGAAAGCATCCATCGAAAGAAAATAATATCAAAATATATATTCTCAAAAATTAAAACACCGTTTTCAGGAGAATAAACATAATC

Coding sequences of Glyma08g47520

Limit To All Plant Sequences

>Glyma08g47520.1   sequence type=CDS   gene model=Glyma08g47520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGGTGAATTTTGTGAAGAATGGAGAGCTTAGATTGCCTCCGGGGTTCCGTTTCCACCCGACTGATGAGGAGCTGGTTCTGCAATACTTGAAGCGCAAGGTCTTCTCCTGCCCTTTGCCAGCCTCTATCATTCCTGAGCTTCATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGATACTTCTTTAGCACCAAAGTGGCCAAATATCCCAACGGAAATCGCTCCAACAGAGCCACAAATTCGGGTTATTGGAAGGCAACTGGCTTGGACAAACAAATTGTTACTTCAAAAGGCAACAACCAAGTTGTCGGAATGAAGAAGACACTTGTTTTCTACAGAGGCAAGCCTCCTAATGGATCCAGAACTGATTGGATCATGCACGAGTATCGCCTCATCCTTAACGCCTCTCAGTCTCAGAGCCATGTTGTTCCCATGGAAAATTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGAATTGGTGCTAAAAATGGGGAGGAGAGCAACTCTAAGGTGGTTTTCTATGACTTCCTAGCGCAGAACAAGACCGATTCCTCCTCATCGGTCGCCAGTGGAATTACACATGAATCAGATGAACATGAAGAGAGCAGTAGCTCCAACACCTTCCCTTATACTATTAGAAGAAAACCTTAA

>Glyma08g47520.2   sequence type=CDS   gene model=Glyma08g47520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCCCATTTTTAGGTGATTTGGAGCAAGAGAGATACTTCTTTAGCACCAAAGTGGCCAAATATCCCAACGGAAATCGCTCCAACAGAGCCACAAATTCGGGTTATTGGAAGGCAACTGGCTTGGACAAACAAATTGTTACTTCAAAAGGCAACAACCAAGTTGTCGGAATGAAGAAGACACTTGTTTTCTACAGAGGCAAGCCTCCTAATGGATCCAGAACTGATTGGATCATGCACGAGTATCGCCTCATCCTTAACGCCTCTCAGTCTCAGAGCCATGTTGTTCCCATGGAAAATTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGAATTGGTGCTAAAAATGGGGAGGAGAGCAACTCTAAGGTGGTTTTCTATGACTTCCTAGCGCAGAACAAGACCGATTCCTCCTCATCGGTCGCCAGTGGAATTACACATGAATCAGATGAACATGAAGAGAGCAGTAGCTCCAACACCTTCCCTTATACTATTAGAAGAAAACCTTAA

Predicted protein sequences of Glyma08g47520

Limit To All Plant Sequences

>Glyma08g47520.1   sequence type=predicted peptide   gene model=Glyma08g47520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKVNFVKNGELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPASIIPELHVCKSDPWDLPGDLEQERYFFSTKVAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNNQVVGMKKTLVFYRGKPPNGSRTDWIMHEYRLILNASQSQSHVVPMENWVLCRIFLKRRIGAKNGEESNSKVVFYDFLAQNKTDSSSSVASGITHESDEHEESSSSNTFPYTIRRKP*

>Glyma08g47520.2   sequence type=predicted peptide   gene model=Glyma08g47520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPFLGDLEQERYFFSTKVAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNNQVVGMKKTLVFYRGKPPNGSRTDWIMHEYRLILNASQSQSHVVPMENWVLCRIFLKRRIGAKNGEESNSKVVFYDFLAQNKTDSSSSVASGITHESDEHEESSSSNTFPYTIRRKP*

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