Glyma08g47440 - SoyBase

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Report for Sequence Feature Glyma08g47440

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46288276
stop:	46297115
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04940	AT	Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein \| chr4:2511212-2517052 REVERSE LENGTH=910	SoyBase	E_val: 0	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1539	KOG	WD repeat protein	JGI		ISS
PTHR13889	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR13889:SF2	Panther	gb def: putative pre-mrna splicing factor [schizosaccharomyces pombe]	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF04192	PFAM	Utp21 specific WD40 associated putative domain	JGI		ISS
UniRef100_B9T842	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T842_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337E14	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337E14 related cluster n=1 Tax=unknown RepID=UPI0002337E14	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g47440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g359600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g47440

Limit To All Plant Sequences

>Glyma08g47440.1   sequence type=CDS   gene model=Glyma08g47440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATATTTGAACCTTACAGAGCAATTGGATGCATCACAAGCAGCGTCCCCTTCTCTGTTCAAAGGCTCGGCACCGAAACTTTCCTTACCGTCAGCGTTGGAAAGGCTTTTCAGGTTTTTAACTGTGCAAAGCTCAATTTGGTTCTCGTTGGTCCTCAACTGCCGAAGAAGATTAGTGCTCTTGCTTCCTATCGCGAATACACTTTTGCTGCATATGGAAACAACATTGCTGTTTTCAAGCGTGCACACCAGGTTGCAACTTGGAGCAGCCATAATGCTAAGGTTAAGTTGCTTCTGTTGTTTGGAGATCATATTGTCAGTGTTGATGCTCGCGGCAACATGTTCTTGTGGCCATTTAAGGGAATTGATGAGAACCTTTTTCCATTTGGGCACATTATGCTGGATGAGAAATTTAGCCCCAGCTGTATAATGCATCCGGATACTTACCTAAATAAGGTTCTTGTTGGGAGTGAGCAAGGTCCTATGCAGCTTTGGAACATTAGCACAAAGAAAAAGATTTTTGAGTTCAAGGGATGGAATTCACCTATCTCCTGTTGTGTTTCATCCCCTGCCTTAGATGTTGTTGCAATTGGCTGTACAGATGGAAGGATTCATGTTCACAACATTCGTTATGATGAAGAGTTAGTTACATTTACACATTCCACACGTGGTTCAGTGACTGCCTTATCTTTTAGCACTGATGGACAGCCTCTTCTAGCTTCGGGAGGTTCATCTGGTGTTATAAGCATATGGAATCTGGAAAAGAAAAGGCTCCAATCAGTTGTAAGAGAGGCTCATGATAGTGTGATCACATCCCTACATTTTTTTGCTAATGAACCAGTGCTAATGAGTTCATCAGCAGACAACTCGATTAAAATGTGGATTTTTGATACAAGTGATGGTGATCCTCGCCTTTTGCGCTTCCGAAGTGGGCATAGTGCTCCTCCCCTTTGCATAAAGTTTTATGCCAATGGAAGACATATTCTTTCTGCAGGTCAGGATCGTGCCTTTCGCCTTTTCTCTGTAGTTCAGGATCAACAAAGCAGGGAGCTTTCTCAACGGCATGTTTCTAAACGTGCTAAGAAATTGAAATTGAAGGAGGAAGAAATAAAATTGAAGCCTGTGATTGCATTTGATTGTGCTGAAATTAGAGAACGTGATTGGTGCAATGTGGTCACTTGTCATATGGATACTGCCCAGGCATATGTTTGGAGACTTCAAAATTTTGTTCTTGGTGAGCATATCTTGAATCCATGCCCTGAAAATCCAACACCTGTAAAGGCTTGTGCTATCAGTGCCTGTGGAAATTTTGTCTTTCTAGGGACAGCAGGTGGATGGATTGAAAGGTTTAATCTTCAATCTGGAATTCGCAGGGGTGCTTATATTGACATTTCAGAATCAAGAAATTGTGCTCATGATGGTGAAGTAGTTGGAGTTGCTTGTGACTCAACAAATACTCTCATGATAAGTGCAGGATACAAAGGAGATATAAAGGTTTGGAATTTCAAAGAACGTGATCTTAAAACCAGATGGGATGTTGATTGTTCTATTGTTAAGATTGTTTACCATCGTTATAATGGTCTCCTGGCTACAGTAGCAGATGATTTAACAATTCAATTATTTGATGTCGTGGCTCTTAGACTTGTTCGTAAATTCGAAGGTCACACAGATCGTATAACAGATTTGTGCTTCAGTGAGGATGGGAAGTGGCTCCTGTCATCTAGTATGGATGGAAGTCTTAGAATTTGGGATGTAATCTTAGCAAGACAGATAGATGCAATACATGTTGATGTACCTATCACGGCATTATCCCTGTCCCCAAACATGGATATATTAGCAACTGCCCATGTTGATCAAAGTGGAATATACCTGTGGGTAAACCAGGCAATGTTCTCTAGTACTTCAAATGTCGATTCATACGCAAGTGGAAAAGAGGTTGTGAGTGTCAAATTGCCGTCTATCTCTTCTGCAGAACATTCTCGAGATGAGCATTATGATGAGCCAATGAATGCATCTCAACCTAAAGATGCTCTGTATTTCTCAACTCAAGATAAGCAAATACCTGAATTAGTTACACTTTCATTGCTGCCTAAGAGCCAGTGGCTGAACTTAATCAACTTGGACATTATAAAGGTTCGCAATAAGCCTATTGAGCCTCCAAAAAAACCTGAAAAAGCTCCATTCTTCTTGCCTTCAGTTCCATCCCTCTCTGGGGAAATATTGTTCGAGTCTGGTAAGTTATCATTAAAGGAGAATGATGGAACAGATGATGGAAAACAAATGAAGACAAGATTAGATATGCCACAATCACGTTTTCTGTATCTTCTCCAATGTTCAAAAGAGACAGACAATTATGCAGCATTTACTGATTATATTAAAGGATTATCTCCGTCAACTCTGGATATGGAGCTTCGAATGTTTCAGATCATTGATGATGATGATGATCAGCAAGAAGCAGAGAAGAGACCTGAGTTGGTATCCATTGAATGGCTTCTGGATTATTTTATTCATGAGCTTTCCTGCAGAAATAATTTTGAGTTTCTACAAGCTGTCATCAGGCTATTTTTGAAGATCCATGGTGAGACAATTCGTCAGCAGTCATGCTTACAAGAAAAGGCAAGGAAGCTTCTAGATATTCAATGCATGGTATGGCAGAGAGTAGATAAATTATTTCAAAGTTCGAGGTGTGTGATTGCCTTTCTTAGTAATTCCCAAATTTAG

Predicted protein sequences of Glyma08g47440

Limit To All Plant Sequences

>Glyma08g47440.1   sequence type=predicted peptide   gene model=Glyma08g47440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIFEPYRAIGCITSSVPFSVQRLGTETFLTVSVGKAFQVFNCAKLNLVLVGPQLPKKISALASYREYTFAAYGNNIAVFKRAHQVATWSSHNAKVKLLLLFGDHIVSVDARGNMFLWPFKGIDENLFPFGHIMLDEKFSPSCIMHPDTYLNKVLVGSEQGPMQLWNISTKKKIFEFKGWNSPISCCVSSPALDVVAIGCTDGRIHVHNIRYDEELVTFTHSTRGSVTALSFSTDGQPLLASGGSSGVISIWNLEKKRLQSVVREAHDSVITSLHFFANEPVLMSSSADNSIKMWIFDTSDGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQRHVSKRAKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILNPCPENPTPVKACAISACGNFVFLGTAGGWIERFNLQSGIRRGAYIDISESRNCAHDGEVVGVACDSTNTLMISAGYKGDIKVWNFKERDLKTRWDVDCSIVKIVYHRYNGLLATVADDLTIQLFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDAIHVDVPITALSLSPNMDILATAHVDQSGIYLWVNQAMFSSTSNVDSYASGKEVVSVKLPSISSAEHSRDEHYDEPMNASQPKDALYFSTQDKQIPELVTLSLLPKSQWLNLINLDIIKVRNKPIEPPKKPEKAPFFLPSVPSLSGEILFESGKLSLKENDGTDDGKQMKTRLDMPQSRFLYLLQCSKETDNYAAFTDYIKGLSPSTLDMELRMFQIIDDDDDQQEAEKRPELVSIEWLLDYFIHELSCRNNFEFLQAVIRLFLKIHGETIRQQSCLQEKARKLLDIQCMVWQRVDKLFQSSRCVIAFLSNSQI*

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