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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G04940 | AT | Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr4:2511212-2517052 REVERSE LENGTH=910 | SoyBase | E_val: 0 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG1539 | KOG | WD repeat protein | JGI | ISS | |
| PTHR13889 | Panther | WD40 REPEAT PROTEIN | JGI | ISS | |
| PTHR13889:SF2 | Panther | gb def: putative pre-mrna splicing factor [schizosaccharomyces pombe] | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF04192 | PFAM | Utp21 specific WD40 associated putative domain | JGI | ISS | |
| UniRef100_B9T842 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T842_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337E14 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337E14 related cluster n=1 Tax=unknown RepID=UPI0002337E14 | SoyBase | E_val: 0 | ISS |
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Glyma08g47440 not represented in the dataset |
Glyma08g47440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g359600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g47440.1 sequence type=CDS gene model=Glyma08g47440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTATATTTGAACCTTACAGAGCAATTGGATGCATCACAAGCAGCGTCCCCTTCTCTGTTCAAAGGCTCGGCACCGAAACTTTCCTTACCGTCAGCGTTGGAAAGGCTTTTCAGGTTTTTAACTGTGCAAAGCTCAATTTGGTTCTCGTTGGTCCTCAACTGCCGAAGAAGATTAGTGCTCTTGCTTCCTATCGCGAATACACTTTTGCTGCATATGGAAACAACATTGCTGTTTTCAAGCGTGCACACCAGGTTGCAACTTGGAGCAGCCATAATGCTAAGGTTAAGTTGCTTCTGTTGTTTGGAGATCATATTGTCAGTGTTGATGCTCGCGGCAACATGTTCTTGTGGCCATTTAAGGGAATTGATGAGAACCTTTTTCCATTTGGGCACATTATGCTGGATGAGAAATTTAGCCCCAGCTGTATAATGCATCCGGATACTTACCTAAATAAGGTTCTTGTTGGGAGTGAGCAAGGTCCTATGCAGCTTTGGAACATTAGCACAAAGAAAAAGATTTTTGAGTTCAAGGGATGGAATTCACCTATCTCCTGTTGTGTTTCATCCCCTGCCTTAGATGTTGTTGCAATTGGCTGTACAGATGGAAGGATTCATGTTCACAACATTCGTTATGATGAAGAGTTAGTTACATTTACACATTCCACACGTGGTTCAGTGACTGCCTTATCTTTTAGCACTGATGGACAGCCTCTTCTAGCTTCGGGAGGTTCATCTGGTGTTATAAGCATATGGAATCTGGAAAAGAAAAGGCTCCAATCAGTTGTAAGAGAGGCTCATGATAGTGTGATCACATCCCTACATTTTTTTGCTAATGAACCAGTGCTAATGAGTTCATCAGCAGACAACTCGATTAAAATGTGGATTTTTGATACAAGTGATGGTGATCCTCGCCTTTTGCGCTTCCGAAGTGGGCATAGTGCTCCTCCCCTTTGCATAAAGTTTTATGCCAATGGAAGACATATTCTTTCTGCAGGTCAGGATCGTGCCTTTCGCCTTTTCTCTGTAGTTCAGGATCAACAAAGCAGGGAGCTTTCTCAACGGCATGTTTCTAAACGTGCTAAGAAATTGAAATTGAAGGAGGAAGAAATAAAATTGAAGCCTGTGATTGCATTTGATTGTGCTGAAATTAGAGAACGTGATTGGTGCAATGTGGTCACTTGTCATATGGATACTGCCCAGGCATATGTTTGGAGACTTCAAAATTTTGTTCTTGGTGAGCATATCTTGAATCCATGCCCTGAAAATCCAACACCTGTAAAGGCTTGTGCTATCAGTGCCTGTGGAAATTTTGTCTTTCTAGGGACAGCAGGTGGATGGATTGAAAGGTTTAATCTTCAATCTGGAATTCGCAGGGGTGCTTATATTGACATTTCAGAATCAAGAAATTGTGCTCATGATGGTGAAGTAGTTGGAGTTGCTTGTGACTCAACAAATACTCTCATGATAAGTGCAGGATACAAAGGAGATATAAAGGTTTGGAATTTCAAAGAACGTGATCTTAAAACCAGATGGGATGTTGATTGTTCTATTGTTAAGATTGTTTACCATCGTTATAATGGTCTCCTGGCTACAGTAGCAGATGATTTAACAATTCAATTATTTGATGTCGTGGCTCTTAGACTTGTTCGTAAATTCGAAGGTCACACAGATCGTATAACAGATTTGTGCTTCAGTGAGGATGGGAAGTGGCTCCTGTCATCTAGTATGGATGGAAGTCTTAGAATTTGGGATGTAATCTTAGCAAGACAGATAGATGCAATACATGTTGATGTACCTATCACGGCATTATCCCTGTCCCCAAACATGGATATATTAGCAACTGCCCATGTTGATCAAAGTGGAATATACCTGTGGGTAAACCAGGCAATGTTCTCTAGTACTTCAAATGTCGATTCATACGCAAGTGGAAAAGAGGTTGTGAGTGTCAAATTGCCGTCTATCTCTTCTGCAGAACATTCTCGAGATGAGCATTATGATGAGCCAATGAATGCATCTCAACCTAAAGATGCTCTGTATTTCTCAACTCAAGATAAGCAAATACCTGAATTAGTTACACTTTCATTGCTGCCTAAGAGCCAGTGGCTGAACTTAATCAACTTGGACATTATAAAGGTTCGCAATAAGCCTATTGAGCCTCCAAAAAAACCTGAAAAAGCTCCATTCTTCTTGCCTTCAGTTCCATCCCTCTCTGGGGAAATATTGTTCGAGTCTGGTAAGTTATCATTAAAGGAGAATGATGGAACAGATGATGGAAAACAAATGAAGACAAGATTAGATATGCCACAATCACGTTTTCTGTATCTTCTCCAATGTTCAAAAGAGACAGACAATTATGCAGCATTTACTGATTATATTAAAGGATTATCTCCGTCAACTCTGGATATGGAGCTTCGAATGTTTCAGATCATTGATGATGATGATGATCAGCAAGAAGCAGAGAAGAGACCTGAGTTGGTATCCATTGAATGGCTTCTGGATTATTTTATTCATGAGCTTTCCTGCAGAAATAATTTTGAGTTTCTACAAGCTGTCATCAGGCTATTTTTGAAGATCCATGGTGAGACAATTCGTCAGCAGTCATGCTTACAAGAAAAGGCAAGGAAGCTTCTAGATATTCAATGCATGGTATGGCAGAGAGTAGATAAATTATTTCAAAGTTCGAGGTGTGTGATTGCCTTTCTTAGTAATTCCCAAATTTAG
>Glyma08g47440.1 sequence type=predicted peptide gene model=Glyma08g47440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGIFEPYRAIGCITSSVPFSVQRLGTETFLTVSVGKAFQVFNCAKLNLVLVGPQLPKKISALASYREYTFAAYGNNIAVFKRAHQVATWSSHNAKVKLLLLFGDHIVSVDARGNMFLWPFKGIDENLFPFGHIMLDEKFSPSCIMHPDTYLNKVLVGSEQGPMQLWNISTKKKIFEFKGWNSPISCCVSSPALDVVAIGCTDGRIHVHNIRYDEELVTFTHSTRGSVTALSFSTDGQPLLASGGSSGVISIWNLEKKRLQSVVREAHDSVITSLHFFANEPVLMSSSADNSIKMWIFDTSDGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQRHVSKRAKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILNPCPENPTPVKACAISACGNFVFLGTAGGWIERFNLQSGIRRGAYIDISESRNCAHDGEVVGVACDSTNTLMISAGYKGDIKVWNFKERDLKTRWDVDCSIVKIVYHRYNGLLATVADDLTIQLFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDAIHVDVPITALSLSPNMDILATAHVDQSGIYLWVNQAMFSSTSNVDSYASGKEVVSVKLPSISSAEHSRDEHYDEPMNASQPKDALYFSTQDKQIPELVTLSLLPKSQWLNLINLDIIKVRNKPIEPPKKPEKAPFFLPSVPSLSGEILFESGKLSLKENDGTDDGKQMKTRLDMPQSRFLYLLQCSKETDNYAAFTDYIKGLSPSTLDMELRMFQIIDDDDDQQEAEKRPELVSIEWLLDYFIHELSCRNNFEFLQAVIRLFLKIHGETIRQQSCLQEKARKLLDIQCMVWQRVDKLFQSSRCVIAFLSNSQI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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