Glyma08g47420 - SoyBase

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Report for Sequence Feature Glyma08g47420

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46278830
stop:	46283755
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71110	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits to 169 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). \| chr1:26818244-26820852 FORWARD LENGTH=557	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KZF1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KZF1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q25A63	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: H0306F03.12 protein n=3 Tax=Oryza sativa RepID=Q25A63_ORYSA	SoyBase	E_val: 3.00E-111	ISS

Expression Patterns of Glyma08g47420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47420

Paralog	Evidence	Comments
Glyma18g38680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g359500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g47420

Limit To All Plant Sequences

>Glyma08g47420.1   sequence type=CDS   gene model=Glyma08g47420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTGCGTTGTTCCCTCTACTGTGTTGTTTCATTTGATCTTGTTCATCTTCCCCCTAGTACTCTCTGTTCACTTACTTTCAGCTTTATCTCCAACTGGGTCCTCCAAACATCCCATAAAGTTTATCCTAGGGGAAGACAATTTGGGTCCATGGAAGAATGAAGTCACACAAGTAGCTCAAGCAGCACGTCCTAGAACTAAGGGTACTCTTGTCCTAGCAGCAAACAGAACCAATAGACCTGACATTCTACAGGGATTTCGACGTTACCATGGTGGTTGGGACATTGCAAATCGACATTACTGGGCCTCAGTTGGATTCACTGGTGTGGCTGGTTTCACCCTTGCTGTCCTGTGGTTTATCTCATTTGGCTTGGCACTTGTGATTCATCTATGCTGTGGATGGGGAATTAACATCAAGGATAAAGGTTCAAATCGTTTGCAAAGAATTTGGCTTGTGTTGCTGTTGTTATTCACCTGTGTTGTAACGACTGGATGCATCGTCCTTTCTTTCGGGCAGGATAAATTCCATGGTGAGGCAGTGGATACCCTCCATTATGTTGTCAATCAGTCAGACTACACAGTGCAGACTCTAAGAAATGTGACAGAGTATCTTGCGCTTACCAAAACTATCGTGGTGGCAGAGATGTTTCTTCCATCTAATATCATGGATGATATTGACAAATTGAATGCAGATCTAGATTCTGCAGCAGATACACTTTCCAAGCAGACAAATGAAAATTCATTTAAAATACGAAAAGTATTCAATGCTGCGCGTCTAGCTTTGATTATGATGGCAGCAGTGATGATTCTACTGGCTGTAATCGGGTTAATCCTGTCTATCCTTGGATATCAACACGCAATCCTCATATTTGTTATCACTGGATGGCTATTGGTTGCAACCACATTCATTTTTTGTGGAGTTTTCACAATCCTTAATAATGCAATTTGTGACACCTGCATGGCCATGGGAGAATGGGTGGAGAATCCGCATGCTGAATCTGCTCTTAGCCATATTCTTCCATGTGTTGATCAGAGAACCACAAACAAGACACTTTTTCAGAGTAAACAAGTTGTTACCAATATTGTTAGTATTGTCAATCGGTTCATCTATGACACTGCAGATGCAAGTCCATCACAAGGTAGTATGAATTATTACAATCAATCTGGACCTGCAATGCCACCTTTGTGCTATCCCTTTGACTCTCAGTTTCGAGAACACCAGTGTACACCTCAAGAAGTGTCCTTGGCCAATGCTTCACTGGTTTGGAAGAGGTATGAATGCAAGACATCTGAATATGGTGTTTGCACCACTGTTGGAAGGGTGACCCCAGAGATTTACTTGGAGTTAGTACAAGTAGTTAACGAAAGTTATGCATTGGAACATTATACTCCACTTTTACTTAGCCTTCAGAATTGCAATTTTGTGAGGCATGCATTCAAAGAAATTACTTCACGTTACTGTCTTCCATTGAACCATTATCTTAAGGTTATCAATGTAGGATTGGGCCTAATTTCAATTGGTGTCTTGCTTTGTCTCGTTCTCTGGATACTCTATGCAAACCGCCCCCAAAGGGAGGAAGCGTTTGTTAGGCTCTACATAGCTAAAAAACTGAAGAACAAATTTAGCAAGAACCCCAACAGAAATTCATCTTTGTCAATAGCAATGAGTGAAGTATAG

Predicted protein sequences of Glyma08g47420

Limit To All Plant Sequences

>Glyma08g47420.1   sequence type=predicted peptide   gene model=Glyma08g47420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKCVVPSTVLFHLILFIFPLVLSVHLLSALSPTGSSKHPIKFILGEDNLGPWKNEVTQVAQAARPRTKGTLVLAANRTNRPDILQGFRRYHGGWDIANRHYWASVGFTGVAGFTLAVLWFISFGLALVIHLCCGWGINIKDKGSNRLQRIWLVLLLLFTCVVTTGCIVLSFGQDKFHGEAVDTLHYVVNQSDYTVQTLRNVTEYLALTKTIVVAEMFLPSNIMDDIDKLNADLDSAADTLSKQTNENSFKIRKVFNAARLALIMMAAVMILLAVIGLILSILGYQHAILIFVITGWLLVATTFIFCGVFTILNNAICDTCMAMGEWVENPHAESALSHILPCVDQRTTNKTLFQSKQVVTNIVSIVNRFIYDTADASPSQGSMNYYNQSGPAMPPLCYPFDSQFREHQCTPQEVSLANASLVWKRYECKTSEYGVCTTVGRVTPEIYLELVQVVNESYALEHYTPLLLSLQNCNFVRHAFKEITSRYCLPLNHYLKVINVGLGLISIGVLLCLVLWILYANRPQREEAFVRLYIAKKLKNKFSKNPNRNSSLSIAMSEV*

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