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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G06580 | AT | Annotation by Michelle Graham. TAIR10: Mevalonate/galactokinase family protein | chr3:2049141-2051867 REVERSE LENGTH=496 | SoyBase | E_val: 0 | ISS |
| GO:0006012 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactose metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0046835 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate phosphorylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004335 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: galactokinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| KOG0631 | KOG | Galactokinase | JGI | ISS | |
| PTHR10457 | Panther | MEVALONATE KINASE/GALACTOKINASE | JGI | ISS | |
| PTHR10457:SF7 | Panther | GALACTOKINASE 2 | JGI | ISS | |
| PF08544 | PFAM | GHMP kinases C terminal | JGI | ISS | |
| PF10509 | PFAM | Galactokinase galactose-binding signature | JGI | ISS | |
| UniRef100_B9RZT4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Galactokinase, putative n=1 Tax=Ricinus communis RepID=B9RZT4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337DC8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337DC8 related cluster n=1 Tax=unknown RepID=UPI0002337DC8 | SoyBase | E_val: 0 | ISS |
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Glyma08g47350 not represented in the dataset |
Glyma08g47350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g358800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g47350.1 sequence type=CDS gene model=Glyma08g47350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGAACTTGATCGGTGAGCATATCGACTACGAGGGGTACTCCGTGTTGCCTATGGCCATTCGCCAAGACACCCAAAACAATCTCAGGATTGCTAATGTCAACCCTCACAAATATGCCACCCCGCTGATCCCAACCAGCTTTGCCAAATTATTACTGTACAAGGGATTCTATGACTACGTAAAACTGAAAGGAGTTGATGTTGGTCAACCTCTGGGGCTTGATGTTCTTGTTGATGGAACAGTTCTGACAGAGATGATATTGTTTCTTGTTTGTTCTTCAACAATTGCTATTATGGCTGCTTTTGGTGTGAACTTCCCAAAGAAAGAAATTGCACAACTTACGTGTGAATGTGAAAGATACATTGGAACACAATCTGGAGGAATGGATCAGGCAATCTCTGTCATGGCCAAAACTGGGTGTGCAGATCTTATTGATTTTAACCCAATCTGCACACAACTTCCTGCTGGTGGGACATTTGTAATAGCTCATTCTTTGGCTGAGTCTCAAAAGGCTGTCACTGCCGCTACAAATTATAATAATAGGGCTTTTGAATGCCATTTGCCATCAATTGTTCTTGGTATAAAGCTTGGAATGAAACCAAGGGAGGAAATTTTAAACCTTAAAACACTCTCCGATGTTGAAGGTTTATGCTTATCGTTTGCAAGTGTTCATAAATCTTCTGATCCTGTCCTTGCTATCAAGGAATTTTTGAAGGAAGAACCATACACAGCTGAAGAAATTGAGAAAATTATTGATGAAAACCTCACCTCAATTTTTAGCAATAATCCTATTTATTTGAATGTCATAAAAGCTGCTGAGCACTACAAGTTACATCAGAGAGCTACCCATGTGTATTCTGAAGCCAGGAGGGTACTTGCTTTCAAGGATATTGAAATGCTAAAGAAGCTTGGTGACCTTTTGAATGAGAGTCATTATAGCTGTAGTGTTCTATACGAATGCAGCTGTTCAGAGTTGGAGGAACTTGTCAACATTTGCCGCAAAAATGGTGCAATTGGAGCTAGACTTACTGGAGCAGGATGGGGTGGCTGTGTTGTTGCTTTGGTGAAAGAGTGCATTGCTTCTCAATTTATCCTTGATTTGAAGGAACGTTTCTACCAGTTTAGGGTGGACAAGGGTGATATCAGCAAGAATGATCTTGACCTTTATGTATTTGCTTCTAAGCCTTCCAGTGGTGCAGCAATTTTCAAGCTTTAG
>Glyma08g47350.1 sequence type=predicted peptide gene model=Glyma08g47350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VNLIGEHIDYEGYSVLPMAIRQDTQNNLRIANVNPHKYATPLIPTSFAKLLLYKGFYDYVKLKGVDVGQPLGLDVLVDGTVLTEMILFLVCSSTIAIMAAFGVNFPKKEIAQLTCECERYIGTQSGGMDQAISVMAKTGCADLIDFNPICTQLPAGGTFVIAHSLAESQKAVTAATNYNNRAFECHLPSIVLGIKLGMKPREEILNLKTLSDVEGLCLSFASVHKSSDPVLAIKEFLKEEPYTAEEIEKIIDENLTSIFSNNPIYLNVIKAAEHYKLHQRATHVYSEARRVLAFKDIEMLKKLGDLLNESHYSCSVLYECSCSELEELVNICRKNGAIGARLTGAGWGGCVVALVKECIASQFILDLKERFYQFRVDKGDISKNDLDLYVFASKPSSGAAIFKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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