Glyma08g47310 - SoyBase

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Report for Sequence Feature Glyma08g47310

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46196813
stop:	46200734
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28840	AT	Annotation by Michelle Graham. TAIR10: XB3 ortholog 1 in Arabidopsis thaliana \| chr2:12378542-12380474 FORWARD LENGTH=456	SoyBase	E_val: 0	ISS
GO:0051049	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
PTHR24158	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24158:SF306	Panther		JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_G8Z251	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hop-interacting protein THI012 n=1 Tax=Solanum lycopersicum RepID=G8Z251_SOLLC	SoyBase	E_val: 0	ISS
UniRef100_I1KZD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZD9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47310

Paralog	Evidence	Comments
Glyma18g38610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g358300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g47310

Limit To All Plant Sequences

>Glyma08g47310.1   sequence type=CDS   gene model=Glyma08g47310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCAGAGGCTAAGCTGCGTGCAACAGCAGCACGAGGAGCATGGTGTGCTCTTCCCAGCACTTGCAAGTGGAGAATTGGAGGTTGTTGAGGCCATGGTGGAGGAAGACCCCACTGTGTTGGAACACACCACTGGCTGTGACCGCCTTTCTCCTCTGCATGTAGCTGCTGCCAATGGTCGGATCGAGGTTCTTTCCATGTTGTTGGATAGGTCTTTCAATGTTGACGTATTGAATCGCCATAAACAGACCCCGTTGATGTTGGCTGTGATGCATGGAAAGACTGGTTGTGTTGAGAAGCTTATTCATGCCGGAGCAAGTATATTGATGTTTGATTCTATACGTCGGAGAACTTGCTTGCACTATGCCGCTTATTATGGAAATATAGACTGCCTTAAGGTCATTCTTTCTGCTGCTCATTCCACACCTGTTGCAGATTCTTGGGGATTTGCAAGATTTGTCAACATAAGAGATGGAAACGGTGCCACCCCTCTGCATCTTGCAGCTCGCCATAGATGGCCGGAATGTCTTCATGCCCTTCTAGACAATGGTGCTCTTGTTTGTGCTTCAACTGGTGGATATGGTTACCCTGGAAGCACGCCACTTCATATGGCTGCCCGTGGTGGTTCTTTGGACTGTGTCCGGATGTTGCTTGCTTGGGGAGCAGATAGACTTCAATTAGATTCTTCTGGGAAAATACCATTCTCAGTTGCCCTGAAGCACAAGCATAAGGCATGTGCTGCCCTGCTGGATCCCTCGTCTGCAGCACCGCTTGTTTGGCCATCCCCATTAAAGTTCATCAGCGAGCTCAATCAAGAAGCAAAGGCCTTACTGGAAAAGGCCTTGCAAGAAGCTAACAGAGAGAGGGAGAAGACCATACTAAAGGAGACTGACATGCCTCCATCCCCACTGAATTCTGAGAGTGAAGATGATAACATTGCCTCTGAGGCTAGCGATATGGAGTTATGTTGCATATGCTTTGACCAAGCATGCACAATTGAGGTAAGACCCTGTGGCCATCAAATGTGTGCTCATTGCACCCTAGCGCTATGCTGTCACAAAAAGCTTGATCCTGCTACTACCGGCCTTTCTGGACCAGTTTGTCCATTTTGCCGTGGATCCATTCTTCAATTACTGGTTGCTAAGATTAACAAAATCAGTGATACAGAAGTGGAATCTAGCCCTATGAAGCCAAGGAGATCACGGAAATCAAATTTCAGTGAAGGGAGCAGCAGCTTCAAGAGCTTGTCGGCCATGGGCTCATTTGGAAGGATTGCCGGCCGCAATTCAGGGAAAATTACAGATGAAAAGCAATGA

Predicted protein sequences of Glyma08g47310

Limit To All Plant Sequences

>Glyma08g47310.1   sequence type=predicted peptide   gene model=Glyma08g47310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQRLSCVQQQHEEHGVLFPALASGELEVVEAMVEEDPTVLEHTTGCDRLSPLHVAAANGRIEVLSMLLDRSFNVDVLNRHKQTPLMLAVMHGKTGCVEKLIHAGASILMFDSIRRRTCLHYAAYYGNIDCLKVILSAAHSTPVADSWGFARFVNIRDGNGATPLHLAARHRWPECLHALLDNGALVCASTGGYGYPGSTPLHMAARGGSLDCVRMLLAWGADRLQLDSSGKIPFSVALKHKHKACAALLDPSSAAPLVWPSPLKFISELNQEAKALLEKALQEANREREKTILKETDMPPSPLNSESEDDNIASEASDMELCCICFDQACTIEVRPCGHQMCAHCTLALCCHKKLDPATTGLSGPVCPFCRGSILQLLVAKINKISDTEVESSPMKPRRSRKSNFSEGSSSFKSLSAMGSFGRIAGRNSGKITDEKQ*

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