Glyma08g47290 - SoyBase

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Report for Sequence Feature Glyma08g47290

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46169187
stop:	46171177
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g47290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37590	AT	Annotation by Michelle Graham. TAIR10: DNA binding with one finger 2.4 \| chr2:15769292-15770497 FORWARD LENGTH=330	SoyBase	E_val: 4.00E-60	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_G7JUJ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dof zinc finger protein n=1 Tax=Medicago truncatula RepID=G7JUJ4_MEDTR	SoyBase	E_val: 4.00E-94	ISS
UniRef100_UPI0002337E11	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337E11 related cluster n=1 Tax=unknown RepID=UPI0002337E11	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g47290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g47290

Paralog	Evidence	Comments
Glyma18g38560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g47290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g358100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g47290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g47290

Limit To All Plant Sequences

>Glyma08g47290.1   sequence type=CDS   gene model=Glyma08g47290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAACCAAATCACCAGCAGCAAGGAAACAACACTGCTGCCAGCTCTCACCTTATTCTTCCACAACCAATACAACCACCACAGCCTCCGCCATCGCAGCCTCATGGACTCGGTGGTAGCACTACCGCCGGGTCCATCAGGCCCGGTTCGATGGCGGATAGGGCAAGGATGGCCAACATACCTATGCAGGAAGCTCAACAAAAGTGTCCAAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGCAGAAGGTACTGGACACGTGGCGGGGCCTTGAGGAACGTCCCTGTTGGCGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGCAACAACACCAGGTCTCCGGCAAACTCCGATCGCCAAACCGCGAGTGCCGGTTCGGCTTCCACCACCAGTGGCTCCTCCTCTGCTGACTTGGTGGCCGGCCTCGGCGGTGGCACCGGAGTGCCACCGTCGCTTAGATTCATGGCTCCATTGCATCAACTTGGTGACCACCACCACCACCTTGGTGGTGGTGGAGGAGAAATAGGGTTAAGCTATGGCTTGAACTATGGCGCAATTTCGGGTCCAATGGGAGGAATAGGAGACTTGAATTTCCATATAGGAGGCAGTTTGAGTGGTGGTGGTTGTTCTATGTTGTCTGGTTTGGAACAATGGAGGGTTCCACAAACTCACCAATTTCCCTTCTTGTCTGGCTTGGAAGCTACTTCATCACATGGGTTGTACCCTTTTGAGGGTGCTAGTGGTAGTGATGGCTACGGTAGCACTCCCATTAAGGTTTCAACTTCTGGGGTTATGTCTCAGCTTGCTTCTGTGAAAATGGAAGACAATCATCATCATCATCATCAGGAACTTGGTTTGCCTAGACAGTTCTTGGGGGTCAATAATAACCCTAGCACAAATGAGCAATATTGGAGTGGTGGTGGTGGTGCCACTTCTGCTTGGACTGATCTTTCTGCTTTCAGCTCTTCTTCCACTACTAGTAATAACGCACTATAG

Predicted protein sequences of Glyma08g47290

Limit To All Plant Sequences

>Glyma08g47290.1   sequence type=predicted peptide   gene model=Glyma08g47290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYTSIPAYIDPANWQQQQPNHQQQGNNTAASSHLILPQPIQPPQPPPSQPHGLGGSTTAGSIRPGSMADRARMANIPMQEAQQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGNNTRSPANSDRQTASAGSASTTSGSSSADLVAGLGGGTGVPPSLRFMAPLHQLGDHHHHLGGGGGEIGLSYGLNYGAISGPMGGIGDLNFHIGGSLSGGGCSMLSGLEQWRVPQTHQFPFLSGLEATSSHGLYPFEGASGSDGYGSTPIKVSTSGVMSQLASVKMEDNHHHHHQELGLPRQFLGVNNNPSTNEQYWSGGGGATSAWTDLSAFSSSSTTSNNAL*

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