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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma08g47171

Feature Type:gene_model
Chromosome:Gm08
Start:46088638
stop:46090852
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g47171
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G28857AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding family protein | chr3:10855781-10856313 REVERSE LENGTH=92 SoyBaseE_val: 1.00E-16ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PTHR12565Panther STEROL REGULATORY ELEMENT-BINDING PROTEIN JGI ISS
PTHR12565:SF8Panther UPSTREAM TRANSCRIPTION FACTOR JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_B9R980UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9R980_RICCO SoyBaseE_val: 6.00E-27ISS
UniRef100_UPI0002337C75UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337C75 related cluster n=1 Tax=unknown RepID=UPI0002337C75 SoyBaseE_val: 1.00E-56ISS

Expression Patterns of Glyma08g47171
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g47171 not represented in the dataset
Glyma08g47171 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g47171 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g356900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g47171
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g47171
>Glyma08g47171.1   sequence type=CDS   gene model=Glyma08g47171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGGCAGAGAAGGTCATCAAGAGCTTCAAAGTTCACTGAGAATGAGATTAATGAACTTGTGTCTAGGTTACAAGTTCTGCTTCCGCAAGTCAACCAAAGAGGAAACTCGAGGCAATCAGCGTCCAAGATTTTGCAGGAAACTTGTTGTCATATTAGGAGGCTGCAGGAAGAGGTGGAACAGCTCAGTGAGAGGCTATCAGAGATCCTGGATTCTGCGGATATCAGTGACATTGACCGAAGAACTTTACAAAACTTTCTGCAACAATATTAA
Predicted protein sequences of Glyma08g47171
>Glyma08g47171.1   sequence type=predicted peptide   gene model=Glyma08g47171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGQRRSSRASKFTENEINELVSRLQVLLPQVNQRGNSRQSASKILQETCCHIRRLQEEVEQLSERLSEILDSADISDIDRRTLQNFLQQY*






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