Report for Sequence Feature Glyma08g47150
Feature Type: gene_model
Chromosome: Gm08
Start: 46054653
stop: 46060424
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g47150
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G30480 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:14897500-14898937 FORWARD LENGTH=277
SoyBase E_val: 2.00E-91 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0051879 GO-mf
Annotation by Michelle Graham. GO Molecular Function: Hsp90 protein binding
SoyBase N/A ISS
KOG4234
KOG
TPR repeat-containing protein
JGI ISS
PTHR22904 Panther
CHAPERONE BINDING PROTEIN
JGI ISS
PTHR22904:SF60 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00515 PFAM
Tetratricopeptide repeat
JGI ISS
PF07719 PFAM
Tetratricopeptide repeat
JGI ISS
UniRef100_G7L2C4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Tetratricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7L2C4_MEDTR
SoyBase E_val: 4.00E-118 ISS
UniRef100_I1KZC7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZC7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g47150
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g47150
Paralog Evidence Comments
Glyma18g38350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g47150 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g356700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g47150
Coding sequences of Glyma08g47150
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g47150.1 sequence type=CDS gene model=Glyma08g47150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGGTGATAGAGCAGGAAGAGAGCGAGCATCGAAACGCGAACCCCTCCAACGACGCTTCCGACGGCTTCGAAACCGCCAGCGACACCGATCTCGCCAGTGACGGCGACGACGGTGGAGCCGGCAGCCCGGAAGAACAGAATCACATCGAACAGAGTCATACCGAACAGAATCACACCGAACAGAGTCACACCGAGAAACACCAGCAGCAGCAGCAGACGGAGCAAGAGCCGGAACACGATGATCCTCAGAGCACCGAATCATCTGAGAATAATGCGTTGATCAATGAAGAAGAGTCGAGACAGAAAGCATTGGATCAAGCAAATGAAGCAAAGGTAGAAGGGAATAAGCTTTTTGTAGAAGGGAAGTATGAAGAGGCATTATTACAGTATGAACTTGCTTTACAAGTAGCATCTGACATGCCTTCATCTGTGGAAATACGGTCAATATGCCATTCAAACCGTGGTGTGTGCTTTCTGAAACTGGAAAAATATGACAACACAATTAAAGAATGCACAAAAGCATTAGAACTGAATCCTGTGTACGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAGCATTTTGACAAGGCTATTGATGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACCATTCGGCGGCTAGAGACCCTTGCTGCAGAAAAAAGGGAAAAGATGATTGCACAAGTGAAAGACATGGGCAATTCTTTCCTGCGCTACCTTGGGCTGAAGGAAAACAACTTTAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAACGTTGA
Predicted protein sequences of Glyma08g47150
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g47150.1 sequence type=predicted peptide gene model=Glyma08g47150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVVIEQEESEHRNANPSNDASDGFETASDTDLASDGDDGGAGSPEEQNHIEQSHTEQNHTEQSHTEKHQQQQQTEQEPEHDDPQSTESSENNALINEEESRQKALDQANEAKVEGNKLFVEGKYEEALLQYELALQVASDMPSSVEIRSICHSNRGVCFLKLEKYDNTIKECTKALELNPVYVKALVRRGEAHEKLEHFDKAIDDMKKILEIDPSNDQARKTIRRLETLAAEKREKMIAQVKDMGNSFLRYLGLKENNFKAVKDPNTGSYSISFQR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
